Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 25739 | 0.66 | 0.782291 |
|
Target: 5'- gCGCCagcggcCGUGCCGUUC--GUCGugAu -3' miRNA: 3'- gGCGGaa----GCACGGCAAGucCAGCugU- -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 15034 | 0.66 | 0.782291 |
|
Target: 5'- gCUGCCaugUUCGcGCCGaccUUCAGGUucuuccCGACAu -3' miRNA: 3'- -GGCGG---AAGCaCGGC---AAGUCCA------GCUGU- -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 50638 | 0.66 | 0.762552 |
|
Target: 5'- cCCGCCaaggagUUGUGCCGcgCAGcGcgcgCGGCGg -3' miRNA: 3'- -GGCGGa-----AGCACGGCaaGUC-Ca---GCUGU- -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 8225 | 0.66 | 0.762552 |
|
Target: 5'- gCGCgCUgCGaGCCGgcCGGGUCGAUg -3' miRNA: 3'- gGCG-GAaGCaCGGCaaGUCCAGCUGu -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 1069 | 0.66 | 0.762552 |
|
Target: 5'- aCCGCCagCGcGCCGaUCAGGgugCGuGCGc -3' miRNA: 3'- -GGCGGaaGCaCGGCaAGUCCa--GC-UGU- -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 3439 | 0.67 | 0.752485 |
|
Target: 5'- gCCGCCUUCagguucuUGCCGUccuUCAGGUagccGCGc -3' miRNA: 3'- -GGCGGAAGc------ACGGCA---AGUCCAgc--UGU- -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 22042 | 0.67 | 0.752485 |
|
Target: 5'- gCGCCg--GUGCCGgcauUCuGGGUCGugAu -3' miRNA: 3'- gGCGGaagCACGGCa---AG-UCCAGCugU- -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 32715 | 0.67 | 0.7423 |
|
Target: 5'- -gGCCg-CGgcucGCCcUUCAGGUCGGCGa -3' miRNA: 3'- ggCGGaaGCa---CGGcAAGUCCAGCUGU- -5' |
|||||||
| 23908 | 5' | -55.2 | NC_005262.1 | + | 42560 | 1.11 | 0.001127 |
|
Target: 5'- gCCGCCUUCGUGCCGUUCAGGUCGACAa -3' miRNA: 3'- -GGCGGAAGCACGGCAAGUCCAGCUGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home