miRNA display CGI


Results 1 - 20 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 17328 0.65 0.638864
Target:  5'- gGCU-GCGucGUGGCCGGCGcggcauucggguccGGCGCg -3'
miRNA:   3'- gCGAcCGCucUAUCGGCUGC--------------UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 35982 0.66 0.635675
Target:  5'- gGCaccGCGGGAUcgugcguuccacguGCCGcGCGAGUGCCg -3'
miRNA:   3'- gCGac-CGCUCUAu-------------CGGC-UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 27732 0.66 0.631423
Target:  5'- uCGCaGGaCGAGAUcgacgAGCUGAagGAGCGUg -3'
miRNA:   3'- -GCGaCC-GCUCUA-----UCGGCUg-CUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 58755 0.66 0.631423
Target:  5'- cCGCcgaucaGGCGcc--GGCCGGCGAGCaacuGCCg -3'
miRNA:   3'- -GCGa-----CCGCucuaUCGGCUGCUCG----CGG- -5'
23909 3' -58.2 NC_005262.1 + 14017 0.66 0.631423
Target:  5'- gGCguccGGCGcGGcagcGGCCGgagccucgggcGCGGGCGCCg -3'
miRNA:   3'- gCGa---CCGCuCUa---UCGGC-----------UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 48147 0.66 0.631423
Target:  5'- uCGCggaaGGCGAGGgggauGcCCGACGcguucagccGCGCCu -3'
miRNA:   3'- -GCGa---CCGCUCUau---C-GGCUGCu--------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 52714 0.66 0.625045
Target:  5'- aCGCcGGaCGAGGccgcgcuGCUGACGAaguucacgggcugggGCGCCa -3'
miRNA:   3'- -GCGaCC-GCUCUau-----CGGCUGCU---------------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 42054 0.66 0.620794
Target:  5'- cCGCUGcGCGAucuu-CCG-UGAGCGCCu -3'
miRNA:   3'- -GCGAC-CGCUcuaucGGCuGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 56958 0.66 0.620794
Target:  5'- gCGCgGGCGAGuucgcgggcGUGGUCGGCaaGAcCGCCu -3'
miRNA:   3'- -GCGaCCGCUC---------UAUCGGCUG--CUcGCGG- -5'
23909 3' -58.2 NC_005262.1 + 4817 0.66 0.620794
Target:  5'- gCGCUGGUuucgccGGCgCGACGcAGUGCCu -3'
miRNA:   3'- -GCGACCGcucua-UCG-GCUGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 4942 0.66 0.620794
Target:  5'- gCGCcGGCGuGAcgucGCCGAucugcgugcCGAaGCGCCg -3'
miRNA:   3'- -GCGaCCGCuCUau--CGGCU---------GCU-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 45106 0.66 0.619731
Target:  5'- gCGCUcaacucGGCGGGu--GCCG-CGAacaccgcGCGCCa -3'
miRNA:   3'- -GCGA------CCGCUCuauCGGCuGCU-------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 61745 0.66 0.610174
Target:  5'- aCGCUGGCuGGGAU-GCUcGCuacGCGCCc -3'
miRNA:   3'- -GCGACCG-CUCUAuCGGcUGcu-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 50421 0.66 0.610174
Target:  5'- gCGCgcccaGGCGcaGGAUuccguGCUGGCGcAGCGCUu -3'
miRNA:   3'- -GCGa----CCGC--UCUAu----CGGCUGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 58707 0.66 0.599572
Target:  5'- aGCUGGCGGcAUGcCCGA--GGCGCUg -3'
miRNA:   3'- gCGACCGCUcUAUcGGCUgcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 27558 0.66 0.599572
Target:  5'- aGCcccGGCGAGGacGCCG-CGcAGCGCg -3'
miRNA:   3'- gCGa--CCGCUCUauCGGCuGC-UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 35508 0.66 0.599572
Target:  5'- gCGCUuGCGcGcAUAGgCGAC-AGCGCCg -3'
miRNA:   3'- -GCGAcCGCuC-UAUCgGCUGcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 4393 0.66 0.599572
Target:  5'- gCGUUGcGCGugcGAUGucgcgcgccuGCUGcGCGAGCGCCu -3'
miRNA:   3'- -GCGAC-CGCu--CUAU----------CGGC-UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 42176 0.66 0.588996
Target:  5'- uCGuCUGuaCGuGAUGGgCGACGGcGCGCCg -3'
miRNA:   3'- -GC-GACc-GCuCUAUCgGCUGCU-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 33838 0.66 0.588996
Target:  5'- uCGCUGG-GAGGUccccgAGCUGAuCGAGUggaucaacgacGCCg -3'
miRNA:   3'- -GCGACCgCUCUA-----UCGGCU-GCUCG-----------CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.