miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 45106 0.66 0.619731
Target:  5'- gCGCUcaacucGGCGGGu--GCCG-CGAacaccgcGCGCCa -3'
miRNA:   3'- -GCGA------CCGCUCuauCGGCuGCU-------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 4817 0.66 0.620794
Target:  5'- gCGCUGGUuucgccGGCgCGACGcAGUGCCu -3'
miRNA:   3'- -GCGACCGcucua-UCG-GCUGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 13459 0.67 0.574247
Target:  5'- uCGCgGGCGcuucguccuGCgCGGCGGGCGCUg -3'
miRNA:   3'- -GCGaCCGCucuau----CG-GCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 51811 0.67 0.526503
Target:  5'- cCGCcucGGCGAcGAcuucagcgcGGCCGACGuGCGCg -3'
miRNA:   3'- -GCGa--CCGCU-CUa--------UCGGCUGCuCGCGg -5'
23909 3' -58.2 NC_005262.1 + 30416 0.67 0.577401
Target:  5'- aGCUGGgCGGcgucgacGAUcacGGCCGGCGGGuUGUCg -3'
miRNA:   3'- gCGACC-GCU-------CUA---UCGGCUGCUC-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 50103 0.67 0.536769
Target:  5'- gCGCcGcGCGAacaGA-AGCCGGcCGAGCGCUc -3'
miRNA:   3'- -GCGaC-CGCU---CUaUCGGCU-GCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 17594 0.67 0.547103
Target:  5'- aGCUGGCGGcGcAgcGCgCGGagcugGAGCGCCa -3'
miRNA:   3'- gCGACCGCU-C-UauCG-GCUg----CUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 49078 0.67 0.547103
Target:  5'- uCGCUGccCGAGcaGGCCGuuACGAugGCGCCg -3'
miRNA:   3'- -GCGACc-GCUCuaUCGGC--UGCU--CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 15978 0.67 0.5575
Target:  5'- uGCUGGCGAucGAcgAGaUCGGCGugcAGCGCg -3'
miRNA:   3'- gCGACCGCU--CUa-UC-GGCUGC---UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 63074 0.67 0.5575
Target:  5'- uCGCgGGCGAGuAUGcGgCGGCGugcaaGGCGCUg -3'
miRNA:   3'- -GCGaCCGCUC-UAU-CgGCUGC-----UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 41542 0.67 0.578453
Target:  5'- gGCgacGGCGuGAUgcgcaggccGGCCGGCGugggcGGCGCg -3'
miRNA:   3'- gCGa--CCGCuCUA---------UCGGCUGC-----UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 46630 0.67 0.567952
Target:  5'- aCGCgaugaagGGCacgcuGAUGGCCGACaGcggcagcauGGCGCCg -3'
miRNA:   3'- -GCGa------CCGcu---CUAUCGGCUG-C---------UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 58564 0.67 0.578453
Target:  5'- gGC-GGCGAGA-AGCUGAUcGGCacGCCg -3'
miRNA:   3'- gCGaCCGCUCUaUCGGCUGcUCG--CGG- -5'
23909 3' -58.2 NC_005262.1 + 42120 0.67 0.578453
Target:  5'- aCGUggaUGGCuuGGGAUaAGCCGgucuACGcGGCGCCg -3'
miRNA:   3'- -GCG---ACCG--CUCUA-UCGGC----UGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 36119 0.67 0.578453
Target:  5'- aCGCUGcGCGAuacGGCgaGGCGAGCaccGCCa -3'
miRNA:   3'- -GCGAC-CGCUcuaUCGg-CUGCUCG---CGG- -5'
23909 3' -58.2 NC_005262.1 + 13709 0.67 0.567952
Target:  5'- gCGC-GGCGcGGGUucGGUCGGCGcAGCgGCCu -3'
miRNA:   3'- -GCGaCCGC-UCUA--UCGGCUGC-UCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 10962 0.67 0.567952
Target:  5'- uGCgUGaGCGcAGccuUAGCCGcucgcCGAGCGCCu -3'
miRNA:   3'- gCG-AC-CGC-UCu--AUCGGCu----GCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 33031 0.67 0.5575
Target:  5'- gCGCgaGGCGAGGUAGgcaucaCGAUcGGCgGCCg -3'
miRNA:   3'- -GCGa-CCGCUCUAUCg-----GCUGcUCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 20176 0.67 0.5575
Target:  5'- -uCUGcGCcGGu--GCCGGCGAGCGUCa -3'
miRNA:   3'- gcGAC-CGcUCuauCGGCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 18937 0.67 0.547103
Target:  5'- gCGCUGGCGGuccucGcgGGCCcACGAuuCGCCu -3'
miRNA:   3'- -GCGACCGCU-----CuaUCGGcUGCUc-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.