miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 13459 0.67 0.574247
Target:  5'- uCGCgGGCGcuucguccuGCgCGGCGGGCGCUg -3'
miRNA:   3'- -GCGaCCGCucuau----CG-GCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 13709 0.67 0.567952
Target:  5'- gCGC-GGCGcGGGUucGGUCGGCGcAGCgGCCu -3'
miRNA:   3'- -GCGaCCGC-UCUA--UCGGCUGC-UCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 30416 0.67 0.577401
Target:  5'- aGCUGGgCGGcgucgacGAUcacGGCCGGCGGGuUGUCg -3'
miRNA:   3'- gCGACC-GCU-------CUA---UCGGCUGCUC-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 10633 0.67 0.536769
Target:  5'- aCGCgaagGGCGGGuu-GCCGAuCGccGCGUCg -3'
miRNA:   3'- -GCGa---CCGCUCuauCGGCU-GCu-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 34122 0.68 0.516311
Target:  5'- uCGCgGGUuGGGcgGGCUGcGCGGGCGCg -3'
miRNA:   3'- -GCGaCCG-CUCuaUCGGC-UGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 54425 0.68 0.48624
Target:  5'- gCGgaGGCGcAGGccGCCG-CGcGCGCCg -3'
miRNA:   3'- -GCgaCCGC-UCUauCGGCuGCuCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 16062 0.68 0.515297
Target:  5'- gGCcGGCGgcgcaccAGAUacAGgCGGCGAGcCGCCg -3'
miRNA:   3'- gCGaCCGC-------UCUA--UCgGCUGCUC-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 27459 0.68 0.5062
Target:  5'- ---aGGUcaGAGAUcagcuuuGCCGGCGAGCGCa -3'
miRNA:   3'- gcgaCCG--CUCUAu------CGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 52544 0.68 0.5062
Target:  5'- gCGCUGGCGcaggcGAUGGaaaCGAuCGAG-GCCc -3'
miRNA:   3'- -GCGACCGCu----CUAUCg--GCU-GCUCgCGG- -5'
23909 3' -58.2 NC_005262.1 + 368 0.68 0.5062
Target:  5'- gGgUGGCGAGGauGUCaGCGAGCaGCCc -3'
miRNA:   3'- gCgACCGCUCUauCGGcUGCUCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 2846 0.68 0.48624
Target:  5'- gCGCUGGCGugcccgcacGAgcuUGGCCGAaauugcCGuuGCGCCg -3'
miRNA:   3'- -GCGACCGCu--------CU---AUCGGCU------GCu-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 34007 0.68 0.476401
Target:  5'- gCGCggacGGCGuGAcgccgGGCCGcauCGuGCGCCg -3'
miRNA:   3'- -GCGa---CCGCuCUa----UCGGCu--GCuCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 6884 0.68 0.496175
Target:  5'- gCGC-GGCcuuGAUcucGCCGGCGAGCGUg -3'
miRNA:   3'- -GCGaCCGcu-CUAu--CGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 13965 0.68 0.476401
Target:  5'- cCGCUGGUGcaccAGggGGCCGGUGGGCGa- -3'
miRNA:   3'- -GCGACCGC----UCuaUCGGCUGCUCGCgg -5'
23909 3' -58.2 NC_005262.1 + 60684 0.68 0.476401
Target:  5'- uGCUGGCGAcgcugGGCUucuucGCGGGCGCg -3'
miRNA:   3'- gCGACCGCUcua--UCGGc----UGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 58902 0.68 0.466662
Target:  5'- gCGCUGcGCGAucaGGCCGGCGgcccgaccgauGGCGCg -3'
miRNA:   3'- -GCGAC-CGCUcuaUCGGCUGC-----------UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 38546 0.68 0.496175
Target:  5'- gGC-GGCGcAGG-AGCCGGCGuuGCGCg -3'
miRNA:   3'- gCGaCCGC-UCUaUCGGCUGCu-CGCGg -5'
23909 3' -58.2 NC_005262.1 + 9196 0.68 0.500175
Target:  5'- aGCc-GCGAGuuGUAGCUGACGucgaucuucucguucAGCGCCu -3'
miRNA:   3'- gCGacCGCUC--UAUCGGCUGC---------------UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 9667 0.68 0.5062
Target:  5'- uGCUcGaGCGAG-UAGgCGA-GGGCGCCg -3'
miRNA:   3'- gCGA-C-CGCUCuAUCgGCUgCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 60843 0.68 0.496175
Target:  5'- aCGCgaucGGCGuggcGAUGGCCGAgGcaauGCGCg -3'
miRNA:   3'- -GCGa---CCGCu---CUAUCGGCUgCu---CGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.