miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 52544 0.68 0.5062
Target:  5'- gCGCUGGCGcaggcGAUGGaaaCGAuCGAG-GCCc -3'
miRNA:   3'- -GCGACCGCu----CUAUCg--GCU-GCUCgCGG- -5'
23909 3' -58.2 NC_005262.1 + 368 0.68 0.5062
Target:  5'- gGgUGGCGAGGauGUCaGCGAGCaGCCc -3'
miRNA:   3'- gCgACCGCUCUauCGGcUGCUCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 58902 0.68 0.466662
Target:  5'- gCGCUGcGCGAucaGGCCGGCGgcccgaccgauGGCGCg -3'
miRNA:   3'- -GCGAC-CGCUcuaUCGGCUGC-----------UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 23823 0.69 0.438082
Target:  5'- gGUUGGUcaucucauGGgcGCCGGCGAGCGCa -3'
miRNA:   3'- gCGACCGcu------CUauCGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 30726 0.69 0.438082
Target:  5'- cCGCcgUGGCGAGAgGGUCGA-GGGC-CCg -3'
miRNA:   3'- -GCG--ACCGCUCUaUCGGCUgCUCGcGG- -5'
23909 3' -58.2 NC_005262.1 + 58257 0.69 0.419596
Target:  5'- gGCUGGCGGGAUuccccAGCCuGACcgcucuGGCGUa -3'
miRNA:   3'- gCGACCGCUCUA-----UCGG-CUGc-----UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 35000 0.69 0.436212
Target:  5'- gCGCggGcGCGAGGUcacGGUCGACGuccaucuucacuGCGCCg -3'
miRNA:   3'- -GCGa-C-CGCUCUA---UCGGCUGCu-----------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 2908 0.69 0.438082
Target:  5'- gGCUGGUGAGGUucaucuGGUCGGCGcaguAGUGUg -3'
miRNA:   3'- gCGACCGCUCUA------UCGGCUGC----UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 49211 0.69 0.419596
Target:  5'- uGCUGGcCGAGGgcGGCCucGGCGGcGCGCa -3'
miRNA:   3'- gCGACC-GCUCUa-UCGG--CUGCU-CGCGg -5'
23909 3' -58.2 NC_005262.1 + 38330 0.69 0.419596
Target:  5'- aGUUGGCGAGcgGcaucGCCucGCGcAGCGCCu -3'
miRNA:   3'- gCGACCGCUCuaU----CGGc-UGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 44969 0.69 0.419596
Target:  5'- cCGCcgaGGCGAG--GGCCGACGuGCaGCa -3'
miRNA:   3'- -GCGa--CCGCUCuaUCGGCUGCuCG-CGg -5'
23909 3' -58.2 NC_005262.1 + 28002 0.7 0.36709
Target:  5'- uGCaGGaCGAGAacgacggcgAGCCGaucuacGCGGGCGCCg -3'
miRNA:   3'- gCGaCC-GCUCUa--------UCGGC------UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 46147 0.7 0.40159
Target:  5'- gCGCUGGCGGGcgAucucugccugcuGCuCGGCGAgcucGCGCUg -3'
miRNA:   3'- -GCGACCGCUCuaU------------CG-GCUGCU----CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 17913 0.7 0.384083
Target:  5'- ---cGGCGAGcc-GCCGAUcGGCGCCg -3'
miRNA:   3'- gcgaCCGCUCuauCGGCUGcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 49666 0.7 0.375522
Target:  5'- gGCggcGGCaugGGGAUGGUCGGCGGcGCGCg -3'
miRNA:   3'- gCGa--CCG---CUCUAUCGGCUGCU-CGCGg -5'
23909 3' -58.2 NC_005262.1 + 60484 0.7 0.36709
Target:  5'- gCGCgaucagGGCGAGAcgccgGGCCGcGCG-GCGCa -3'
miRNA:   3'- -GCGa-----CCGCUCUa----UCGGC-UGCuCGCGg -5'
23909 3' -58.2 NC_005262.1 + 60328 0.7 0.384083
Target:  5'- cCGCaaugGGUGAGGgaGGUCGACGGGCGg- -3'
miRNA:   3'- -GCGa---CCGCUCUa-UCGGCUGCUCGCgg -5'
23909 3' -58.2 NC_005262.1 + 30879 0.7 0.35879
Target:  5'- gCGCUGGCGAGcGUcGCgCGuGCGA-CGCCg -3'
miRNA:   3'- -GCGACCGCUC-UAuCG-GC-UGCUcGCGG- -5'
23909 3' -58.2 NC_005262.1 + 52244 0.7 0.357967
Target:  5'- aGC-GcGCGuGAUgcacuucAGCCGGCGAGCgGCCg -3'
miRNA:   3'- gCGaC-CGCuCUA-------UCGGCUGCUCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 21362 0.7 0.392773
Target:  5'- gCGCUGcuuCGuGAUguugcGGCCGGCuGGCGCCg -3'
miRNA:   3'- -GCGACc--GCuCUA-----UCGGCUGcUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.