miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 40948 1.12 0.000432
Target:  5'- aCGCUGGCGAGAUAGCCGACGAGCGCCu -3'
miRNA:   3'- -GCGACCGCUCUAUCGGCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 61160 0.83 0.05551
Target:  5'- uCGCggcGGCGGGcgAGCUGACGGGCGCg -3'
miRNA:   3'- -GCGa--CCGCUCuaUCGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 57478 0.8 0.084328
Target:  5'- gGUcgagGGCGAGAagccGGCCGACGAGgCGCCg -3'
miRNA:   3'- gCGa---CCGCUCUa---UCGGCUGCUC-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 10313 0.8 0.084328
Target:  5'- gGCUGGCuGAGAUcGUCGACGAGCaCCu -3'
miRNA:   3'- gCGACCG-CUCUAuCGGCUGCUCGcGG- -5'
23909 3' -58.2 NC_005262.1 + 56757 0.79 0.096783
Target:  5'- gCGCUGGCGuc--GGgCGACGAGCGCUa -3'
miRNA:   3'- -GCGACCGCucuaUCgGCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 33634 0.78 0.123683
Target:  5'- cCGCcGGCGcAGGUguccgaGGCUGACGAGCGCg -3'
miRNA:   3'- -GCGaCCGC-UCUA------UCGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 34043 0.77 0.137747
Target:  5'- gGCgguugaGGCGGGuUAGCCGG-GAGCGCCg -3'
miRNA:   3'- gCGa-----CCGCUCuAUCGGCUgCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 57483 0.77 0.137747
Target:  5'- gCGCcGaCGAGAggcGGCCGGCGAGCGCa -3'
miRNA:   3'- -GCGaCcGCUCUa--UCGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 47322 0.75 0.199173
Target:  5'- aGCUGGCGAccGAUucGGCgcucgaGACGcAGCGCCa -3'
miRNA:   3'- gCGACCGCU--CUA--UCGg-----CUGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 17224 0.75 0.19409
Target:  5'- gCGCUGGCGucGUGGUCGucgUGGGCGUCg -3'
miRNA:   3'- -GCGACCGCucUAUCGGCu--GCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 51221 0.75 0.174881
Target:  5'- uCGCcGGCGGcagcagcAGCuCGACGAGCGCCg -3'
miRNA:   3'- -GCGaCCGCUcua----UCG-GCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 43277 0.75 0.19409
Target:  5'- aGUggGGUGAGGUcGUCG-CGAGCGCCg -3'
miRNA:   3'- gCGa-CCGCUCUAuCGGCuGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 20777 0.75 0.201238
Target:  5'- aGCUGGCGAGGUagcGGCCGAagaacuggcccgacaCGaAGCgGCCc -3'
miRNA:   3'- gCGACCGCUCUA---UCGGCU---------------GC-UCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 12590 0.74 0.220675
Target:  5'- cCGCcGGCGAGGcgucGCgGAUGAGCGCg -3'
miRNA:   3'- -GCGaCCGCUCUau--CGgCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 59237 0.74 0.23215
Target:  5'- cCGCUGGCgcGAGAUGcGCCG-CGcGCGCa -3'
miRNA:   3'- -GCGACCG--CUCUAU-CGGCuGCuCGCGg -5'
23909 3' -58.2 NC_005262.1 + 10458 0.74 0.226351
Target:  5'- gCGCggucGGCGAGGUAG-CGGCGcGCGCg -3'
miRNA:   3'- -GCGa---CCGCUCUAUCgGCUGCuCGCGg -5'
23909 3' -58.2 NC_005262.1 + 48300 0.73 0.256607
Target:  5'- uCGCcGGUGAGcgAGCCGcCGcgcucgguguaAGCGCCg -3'
miRNA:   3'- -GCGaCCGCUCuaUCGGCuGC-----------UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 24929 0.73 0.243514
Target:  5'- gGCaUGGCGGGAUGcgcacauGCCGcGCGGcGCGCCc -3'
miRNA:   3'- gCG-ACCGCUCUAU-------CGGC-UGCU-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 56788 0.73 0.238074
Target:  5'- aGCUGGCcggccuGAaGGCCGACGucgagcggcuggAGCGCCu -3'
miRNA:   3'- gCGACCGcu----CUaUCGGCUGC------------UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 45025 0.73 0.256607
Target:  5'- aCGCggcagaUGGCGAGcAUGGggaucaacCCGGCGAGCgGCCg -3'
miRNA:   3'- -GCG------ACCGCUC-UAUC--------GGCUGCUCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.