Results 21 - 40 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23909 | 3' | -58.2 | NC_005262.1 | + | 56788 | 0.73 | 0.238074 |
Target: 5'- aGCUGGCcggccuGAaGGCCGACGucgagcggcuggAGCGCCu -3' miRNA: 3'- gCGACCGcu----CUaUCGGCUGC------------UCGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 39145 | 0.72 | 0.290096 |
Target: 5'- aCGCUGGCGAcGUAGCUGucaGCGGuucgcugaagcGCGCUg -3' miRNA: 3'- -GCGACCGCUcUAUCGGC---UGCU-----------CGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 62915 | 0.72 | 0.303693 |
Target: 5'- aGCUGGCGcGcaaucucAUGGCaaagGACGAGCGCg -3' miRNA: 3'- gCGACCGCuC-------UAUCGg---CUGCUCGCGg -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 23483 | 0.71 | 0.350621 |
Target: 5'- gGCUgGGCGAGGUucgcccGCUGACGcccgaggagcuGCGCCa -3' miRNA: 3'- gCGA-CCGCUCUAu-----CGGCUGCu----------CGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 47935 | 0.71 | 0.319284 |
Target: 5'- uCGCgu-CGAGGUacauGGCCGuCGAGUGCCg -3' miRNA: 3'- -GCGaccGCUCUA----UCGGCuGCUCGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 56142 | 0.71 | 0.311786 |
Target: 5'- cCGCUcGCgGAGAUAGCCGuCGccgccGGCGUCg -3' miRNA: 3'- -GCGAcCG-CUCUAUCGGCuGC-----UCGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 56913 | 0.71 | 0.318528 |
Target: 5'- uCGCcGGCGAGAUcaaGGCCGcgcuCGAGaagcgcaCGCCg -3' miRNA: 3'- -GCGaCCGCUCUA---UCGGCu---GCUC-------GCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 6552 | 0.71 | 0.319284 |
Target: 5'- gGCUucGGCGuGuugccGCCGACGAGCGgCg -3' miRNA: 3'- gCGA--CCGCuCuau--CGGCUGCUCGCgG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 38072 | 0.71 | 0.326917 |
Target: 5'- cCGCUGGCGcGAUcuuGCUGACGuacccguaugGGuCGCCg -3' miRNA: 3'- -GCGACCGCuCUAu--CGGCUGC----------UC-GCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 60635 | 0.71 | 0.350621 |
Target: 5'- aCGCUGGCGAG-----CGGCGAGCaCCg -3' miRNA: 3'- -GCGACCGCUCuaucgGCUGCUCGcGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 30879 | 0.7 | 0.35879 |
Target: 5'- gCGCUGGCGAGcGUcGCgCGuGCGA-CGCCg -3' miRNA: 3'- -GCGACCGCUC-UAuCG-GC-UGCUcGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 46147 | 0.7 | 0.40159 |
Target: 5'- gCGCUGGCGGGcgAucucugccugcuGCuCGGCGAgcucGCGCUg -3' miRNA: 3'- -GCGACCGCUCuaU------------CG-GCUGCU----CGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 44880 | 0.7 | 0.356325 |
Target: 5'- aCGCUGGCcaaggaccaaGAGAaGGCCGugGucgggacuggaugcGGCGCa -3' miRNA: 3'- -GCGACCG----------CUCUaUCGGCugC--------------UCGCGg -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 28002 | 0.7 | 0.36709 |
Target: 5'- uGCaGGaCGAGAacgacggcgAGCCGaucuacGCGGGCGCCg -3' miRNA: 3'- gCGaCC-GCUCUa--------UCGGC------UGCUCGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 17913 | 0.7 | 0.384083 |
Target: 5'- ---cGGCGAGcc-GCCGAUcGGCGCCg -3' miRNA: 3'- gcgaCCGCUCuauCGGCUGcUCGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 52244 | 0.7 | 0.357967 |
Target: 5'- aGC-GcGCGuGAUgcacuucAGCCGGCGAGCgGCCg -3' miRNA: 3'- gCGaC-CGCuCUA-------UCGGCUGCUCG-CGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 60484 | 0.7 | 0.36709 |
Target: 5'- gCGCgaucagGGCGAGAcgccgGGCCGcGCG-GCGCa -3' miRNA: 3'- -GCGa-----CCGCUCUa----UCGGC-UGCuCGCGg -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 49666 | 0.7 | 0.375522 |
Target: 5'- gGCggcGGCaugGGGAUGGUCGGCGGcGCGCg -3' miRNA: 3'- gCGa--CCG---CUCUAUCGGCUGCU-CGCGg -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 21362 | 0.7 | 0.392773 |
Target: 5'- gCGCUGcuuCGuGAUguugcGGCCGGCuGGCGCCg -3' miRNA: 3'- -GCGACc--GCuCUA-----UCGGCUGcUCGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 60328 | 0.7 | 0.384083 |
Target: 5'- cCGCaaugGGUGAGGgaGGUCGACGGGCGg- -3' miRNA: 3'- -GCGa---CCGCUCUa-UCGGCUGCUCGCgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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