Results 41 - 60 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23909 | 3' | -58.2 | NC_005262.1 | + | 58257 | 0.69 | 0.419596 |
Target: 5'- gGCUGGCGGGAUuccccAGCCuGACcgcucuGGCGUa -3' miRNA: 3'- gCGACCGCUCUA-----UCGG-CUGc-----UCGCGg -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 49211 | 0.69 | 0.419596 |
Target: 5'- uGCUGGcCGAGGgcGGCCucGGCGGcGCGCa -3' miRNA: 3'- gCGACC-GCUCUa-UCGG--CUGCU-CGCGg -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 38330 | 0.69 | 0.419596 |
Target: 5'- aGUUGGCGAGcgGcaucGCCucGCGcAGCGCCu -3' miRNA: 3'- gCGACCGCUCuaU----CGGc-UGC-UCGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 44969 | 0.69 | 0.419596 |
Target: 5'- cCGCcgaGGCGAG--GGCCGACGuGCaGCa -3' miRNA: 3'- -GCGa--CCGCUCuaUCGGCUGCuCG-CGg -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 35000 | 0.69 | 0.436212 |
Target: 5'- gCGCggGcGCGAGGUcacGGUCGACGuccaucuucacuGCGCCg -3' miRNA: 3'- -GCGa-C-CGCUCUA---UCGGCUGCu-----------CGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 2908 | 0.69 | 0.438082 |
Target: 5'- gGCUGGUGAGGUucaucuGGUCGGCGcaguAGUGUg -3' miRNA: 3'- gCGACCGCUCUA------UCGGCUGC----UCGCGg -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 23823 | 0.69 | 0.438082 |
Target: 5'- gGUUGGUcaucucauGGgcGCCGGCGAGCGCa -3' miRNA: 3'- gCGACCGcu------CUauCGGCUGCUCGCGg -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 30726 | 0.69 | 0.438082 |
Target: 5'- cCGCcgUGGCGAGAgGGUCGA-GGGC-CCg -3' miRNA: 3'- -GCG--ACCGCUCUaUCGGCUgCUCGcGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 60684 | 0.68 | 0.476401 |
Target: 5'- uGCUGGCGAcgcugGGCUucuucGCGGGCGCg -3' miRNA: 3'- gCGACCGCUcua--UCGGc----UGCUCGCGg -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 9667 | 0.68 | 0.5062 |
Target: 5'- uGCUcGaGCGAG-UAGgCGA-GGGCGCCg -3' miRNA: 3'- gCGA-C-CGCUCuAUCgGCUgCUCGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 27459 | 0.68 | 0.5062 |
Target: 5'- ---aGGUcaGAGAUcagcuuuGCCGGCGAGCGCa -3' miRNA: 3'- gcgaCCG--CUCUAu------CGGCUGCUCGCGg -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 16062 | 0.68 | 0.515297 |
Target: 5'- gGCcGGCGgcgcaccAGAUacAGgCGGCGAGcCGCCg -3' miRNA: 3'- gCGaCCGC-------UCUA--UCgGCUGCUC-GCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 34122 | 0.68 | 0.516311 |
Target: 5'- uCGCgGGUuGGGcgGGCUGcGCGGGCGCg -3' miRNA: 3'- -GCGaCCG-CUCuaUCGGC-UGCUCGCGg -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 54425 | 0.68 | 0.48624 |
Target: 5'- gCGgaGGCGcAGGccGCCG-CGcGCGCCg -3' miRNA: 3'- -GCgaCCGC-UCUauCGGCuGCuCGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 913 | 0.68 | 0.496175 |
Target: 5'- gCGCUGGCGGGugaugguGUCGcccaucuucACGGGCGUg -3' miRNA: 3'- -GCGACCGCUCuau----CGGC---------UGCUCGCGg -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 2846 | 0.68 | 0.48624 |
Target: 5'- gCGCUGGCGugcccgcacGAgcuUGGCCGAaauugcCGuuGCGCCg -3' miRNA: 3'- -GCGACCGCu--------CU---AUCGGCU------GCu-CGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 58329 | 0.68 | 0.465693 |
Target: 5'- aGCUcucgaacGGCGAGGUucGCCG-CGAggucaugccGCGCCg -3' miRNA: 3'- gCGA-------CCGCUCUAu-CGGCuGCU---------CGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 34007 | 0.68 | 0.476401 |
Target: 5'- gCGCggacGGCGuGAcgccgGGCCGcauCGuGCGCCg -3' miRNA: 3'- -GCGa---CCGCuCUa----UCGGCu--GCuCGCGG- -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 13965 | 0.68 | 0.476401 |
Target: 5'- cCGCUGGUGcaccAGggGGCCGGUGGGCGa- -3' miRNA: 3'- -GCGACCGC----UCuaUCGGCUGCUCGCgg -5' |
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23909 | 3' | -58.2 | NC_005262.1 | + | 24360 | 0.68 | 0.48624 |
Target: 5'- uGCgUGGCGAGGUAauCCGA-GAGCagGCCg -3' miRNA: 3'- gCG-ACCGCUCUAUc-GGCUgCUCG--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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