miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 49211 0.69 0.419596
Target:  5'- uGCUGGcCGAGGgcGGCCucGGCGGcGCGCa -3'
miRNA:   3'- gCGACC-GCUCUa-UCGG--CUGCU-CGCGg -5'
23909 3' -58.2 NC_005262.1 + 38330 0.69 0.419596
Target:  5'- aGUUGGCGAGcgGcaucGCCucGCGcAGCGCCu -3'
miRNA:   3'- gCGACCGCUCuaU----CGGc-UGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 58257 0.69 0.419596
Target:  5'- gGCUGGCGGGAUuccccAGCCuGACcgcucuGGCGUa -3'
miRNA:   3'- gCGACCGCUCUA-----UCGG-CUGc-----UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 44969 0.69 0.419596
Target:  5'- cCGCcgaGGCGAG--GGCCGACGuGCaGCa -3'
miRNA:   3'- -GCGa--CCGCUCuaUCGGCUGCuCG-CGg -5'
23909 3' -58.2 NC_005262.1 + 35000 0.69 0.436212
Target:  5'- gCGCggGcGCGAGGUcacGGUCGACGuccaucuucacuGCGCCg -3'
miRNA:   3'- -GCGa-C-CGCUCUA---UCGGCUGCu-----------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 30726 0.69 0.438082
Target:  5'- cCGCcgUGGCGAGAgGGUCGA-GGGC-CCg -3'
miRNA:   3'- -GCG--ACCGCUCUaUCGGCUgCUCGcGG- -5'
23909 3' -58.2 NC_005262.1 + 23823 0.69 0.438082
Target:  5'- gGUUGGUcaucucauGGgcGCCGGCGAGCGCa -3'
miRNA:   3'- gCGACCGcu------CUauCGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 2908 0.69 0.438082
Target:  5'- gGCUGGUGAGGUucaucuGGUCGGCGcaguAGUGUg -3'
miRNA:   3'- gCGACCGCUCUA------UCGGCUGC----UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 58329 0.68 0.465693
Target:  5'- aGCUcucgaacGGCGAGGUucGCCG-CGAggucaugccGCGCCg -3'
miRNA:   3'- gCGA-------CCGCUCUAu-CGGCuGCU---------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 58902 0.68 0.466662
Target:  5'- gCGCUGcGCGAucaGGCCGGCGgcccgaccgauGGCGCg -3'
miRNA:   3'- -GCGAC-CGCUcuaUCGGCUGC-----------UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 60684 0.68 0.476401
Target:  5'- uGCUGGCGAcgcugGGCUucuucGCGGGCGCg -3'
miRNA:   3'- gCGACCGCUcua--UCGGc----UGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 13965 0.68 0.476401
Target:  5'- cCGCUGGUGcaccAGggGGCCGGUGGGCGa- -3'
miRNA:   3'- -GCGACCGC----UCuaUCGGCUGCUCGCgg -5'
23909 3' -58.2 NC_005262.1 + 34007 0.68 0.476401
Target:  5'- gCGCggacGGCGuGAcgccgGGCCGcauCGuGCGCCg -3'
miRNA:   3'- -GCGa---CCGCuCUa----UCGGCu--GCuCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 24360 0.68 0.48624
Target:  5'- uGCgUGGCGAGGUAauCCGA-GAGCagGCCg -3'
miRNA:   3'- gCG-ACCGCUCUAUc-GGCUgCUCG--CGG- -5'
23909 3' -58.2 NC_005262.1 + 54425 0.68 0.48624
Target:  5'- gCGgaGGCGcAGGccGCCG-CGcGCGCCg -3'
miRNA:   3'- -GCgaCCGC-UCUauCGGCuGCuCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 2846 0.68 0.48624
Target:  5'- gCGCUGGCGugcccgcacGAgcuUGGCCGAaauugcCGuuGCGCCg -3'
miRNA:   3'- -GCGACCGCu--------CU---AUCGGCU------GCu-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 913 0.68 0.496175
Target:  5'- gCGCUGGCGGGugaugguGUCGcccaucuucACGGGCGUg -3'
miRNA:   3'- -GCGACCGCUCuau----CGGC---------UGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 38546 0.68 0.496175
Target:  5'- gGC-GGCGcAGG-AGCCGGCGuuGCGCg -3'
miRNA:   3'- gCGaCCGC-UCUaUCGGCUGCu-CGCGg -5'
23909 3' -58.2 NC_005262.1 + 60843 0.68 0.496175
Target:  5'- aCGCgaucGGCGuggcGAUGGCCGAgGcaauGCGCg -3'
miRNA:   3'- -GCGa---CCGCu---CUAUCGGCUgCu---CGCGg -5'
23909 3' -58.2 NC_005262.1 + 6884 0.68 0.496175
Target:  5'- gCGC-GGCcuuGAUcucGCCGGCGAGCGUg -3'
miRNA:   3'- -GCGaCCGcu-CUAu--CGGCUGCUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.