miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 368 0.68 0.5062
Target:  5'- gGgUGGCGAGGauGUCaGCGAGCaGCCc -3'
miRNA:   3'- gCgACCGCUCUauCGGcUGCUCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 913 0.68 0.496175
Target:  5'- gCGCUGGCGGGugaugguGUCGcccaucuucACGGGCGUg -3'
miRNA:   3'- -GCGACCGCUCuau----CGGC---------UGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 1033 0.67 0.526503
Target:  5'- uCGCUGGCGAcccacguGCCGAaugcugcGGCGCUg -3'
miRNA:   3'- -GCGACCGCUcuau---CGGCUgc-----UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 2846 0.68 0.48624
Target:  5'- gCGCUGGCGugcccgcacGAgcuUGGCCGAaauugcCGuuGCGCCg -3'
miRNA:   3'- -GCGACCGCu--------CU---AUCGGCU------GCu-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 2908 0.69 0.438082
Target:  5'- gGCUGGUGAGGUucaucuGGUCGGCGcaguAGUGUg -3'
miRNA:   3'- gCGACCGCUCUA------UCGGCUGC----UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 3844 0.67 0.526503
Target:  5'- aGCgGGCGAaucuGCUucGCGAGCGCCu -3'
miRNA:   3'- gCGaCCGCUcuauCGGc-UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 4393 0.66 0.599572
Target:  5'- gCGUUGcGCGugcGAUGucgcgcgccuGCUGcGCGAGCGCCu -3'
miRNA:   3'- -GCGAC-CGCu--CUAU----------CGGC-UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 4817 0.66 0.620794
Target:  5'- gCGCUGGUuucgccGGCgCGACGcAGUGCCu -3'
miRNA:   3'- -GCGACCGcucua-UCG-GCUGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 4942 0.66 0.620794
Target:  5'- gCGCcGGCGuGAcgucGCCGAucugcgugcCGAaGCGCCg -3'
miRNA:   3'- -GCGaCCGCuCUau--CGGCU---------GCU-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 6552 0.71 0.319284
Target:  5'- gGCUucGGCGuGuugccGCCGACGAGCGgCg -3'
miRNA:   3'- gCGA--CCGCuCuau--CGGCUGCUCGCgG- -5'
23909 3' -58.2 NC_005262.1 + 6884 0.68 0.496175
Target:  5'- gCGC-GGCcuuGAUcucGCCGGCGAGCGUg -3'
miRNA:   3'- -GCGaCCGcu-CUAu--CGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 9196 0.68 0.500175
Target:  5'- aGCc-GCGAGuuGUAGCUGACGucgaucuucucguucAGCGCCu -3'
miRNA:   3'- gCGacCGCUC--UAUCGGCUGC---------------UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 9667 0.68 0.5062
Target:  5'- uGCUcGaGCGAG-UAGgCGA-GGGCGCCg -3'
miRNA:   3'- gCGA-C-CGCUCuAUCgGCUgCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 10313 0.8 0.084328
Target:  5'- gGCUGGCuGAGAUcGUCGACGAGCaCCu -3'
miRNA:   3'- gCGACCG-CUCUAuCGGCUGCUCGcGG- -5'
23909 3' -58.2 NC_005262.1 + 10458 0.74 0.226351
Target:  5'- gCGCggucGGCGAGGUAG-CGGCGcGCGCg -3'
miRNA:   3'- -GCGa---CCGCUCUAUCgGCUGCuCGCGg -5'
23909 3' -58.2 NC_005262.1 + 10633 0.67 0.536769
Target:  5'- aCGCgaagGGCGGGuu-GCCGAuCGccGCGUCg -3'
miRNA:   3'- -GCGa---CCGCUCuauCGGCU-GCu-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 10962 0.67 0.567952
Target:  5'- uGCgUGaGCGcAGccuUAGCCGcucgcCGAGCGCCu -3'
miRNA:   3'- gCG-AC-CGC-UCu--AUCGGCu----GCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 11643 0.66 0.588996
Target:  5'- gGCUcGGCGGc---GCCGGCGucGCGCUg -3'
miRNA:   3'- gCGA-CCGCUcuauCGGCUGCu-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 12590 0.74 0.220675
Target:  5'- cCGCcGGCGAGGcgucGCgGAUGAGCGCg -3'
miRNA:   3'- -GCGaCCGCUCUau--CGgCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 13459 0.67 0.574247
Target:  5'- uCGCgGGCGcuucguccuGCgCGGCGGGCGCUg -3'
miRNA:   3'- -GCGaCCGCucuau----CG-GCUGCUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.