miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 13709 0.67 0.567952
Target:  5'- gCGC-GGCGcGGGUucGGUCGGCGcAGCgGCCu -3'
miRNA:   3'- -GCGaCCGC-UCUA--UCGGCUGC-UCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 13965 0.68 0.476401
Target:  5'- cCGCUGGUGcaccAGggGGCCGGUGGGCGa- -3'
miRNA:   3'- -GCGACCGC----UCuaUCGGCUGCUCGCgg -5'
23909 3' -58.2 NC_005262.1 + 14017 0.66 0.631423
Target:  5'- gGCguccGGCGcGGcagcGGCCGgagccucgggcGCGGGCGCCg -3'
miRNA:   3'- gCGa---CCGCuCUa---UCGGC-----------UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 15978 0.67 0.5575
Target:  5'- uGCUGGCGAucGAcgAGaUCGGCGugcAGCGCg -3'
miRNA:   3'- gCGACCGCU--CUa-UC-GGCUGC---UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 16062 0.68 0.515297
Target:  5'- gGCcGGCGgcgcaccAGAUacAGgCGGCGAGcCGCCg -3'
miRNA:   3'- gCGaCCGC-------UCUA--UCgGCUGCUC-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 17224 0.75 0.19409
Target:  5'- gCGCUGGCGucGUGGUCGucgUGGGCGUCg -3'
miRNA:   3'- -GCGACCGCucUAUCGGCu--GCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 17328 0.65 0.638864
Target:  5'- gGCU-GCGucGUGGCCGGCGcggcauucggguccGGCGCg -3'
miRNA:   3'- gCGAcCGCucUAUCGGCUGC--------------UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 17594 0.67 0.547103
Target:  5'- aGCUGGCGGcGcAgcGCgCGGagcugGAGCGCCa -3'
miRNA:   3'- gCGACCGCU-C-UauCG-GCUg----CUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 17913 0.7 0.384083
Target:  5'- ---cGGCGAGcc-GCCGAUcGGCGCCg -3'
miRNA:   3'- gcgaCCGCUCuauCGGCUGcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 18937 0.67 0.547103
Target:  5'- gCGCUGGCGGuccucGcgGGCCcACGAuuCGCCu -3'
miRNA:   3'- -GCGACCGCU-----CuaUCGGcUGCUc-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 20176 0.67 0.5575
Target:  5'- -uCUGcGCcGGu--GCCGGCGAGCGUCa -3'
miRNA:   3'- gcGAC-CGcUCuauCGGCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 20777 0.75 0.201238
Target:  5'- aGCUGGCGAGGUagcGGCCGAagaacuggcccgacaCGaAGCgGCCc -3'
miRNA:   3'- gCGACCGCUCUA---UCGGCU---------------GC-UCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 21362 0.7 0.392773
Target:  5'- gCGCUGcuuCGuGAUguugcGGCCGGCuGGCGCCg -3'
miRNA:   3'- -GCGACc--GCuCUA-----UCGGCUGcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 22783 0.73 0.244124
Target:  5'- gGCUGaaGCGAGAUcgcggugccaucAGCa-GCGAGCGCCg -3'
miRNA:   3'- gCGAC--CGCUCUA------------UCGgcUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 23483 0.71 0.350621
Target:  5'- gGCUgGGCGAGGUucgcccGCUGACGcccgaggagcuGCGCCa -3'
miRNA:   3'- gCGA-CCGCUCUAu-----CGGCUGCu----------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 23823 0.69 0.438082
Target:  5'- gGUUGGUcaucucauGGgcGCCGGCGAGCGCa -3'
miRNA:   3'- gCGACCGcu------CUauCGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 24360 0.68 0.48624
Target:  5'- uGCgUGGCGAGGUAauCCGA-GAGCagGCCg -3'
miRNA:   3'- gCG-ACCGCUCUAUc-GGCUgCUCG--CGG- -5'
23909 3' -58.2 NC_005262.1 + 24929 0.73 0.243514
Target:  5'- gGCaUGGCGGGAUGcgcacauGCCGcGCGGcGCGCCc -3'
miRNA:   3'- gCG-ACCGCUCUAU-------CGGC-UGCU-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 27459 0.68 0.5062
Target:  5'- ---aGGUcaGAGAUcagcuuuGCCGGCGAGCGCa -3'
miRNA:   3'- gcgaCCG--CUCUAu------CGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 27558 0.66 0.599572
Target:  5'- aGCcccGGCGAGGacGCCG-CGcAGCGCg -3'
miRNA:   3'- gCGa--CCGCUCUauCGGCuGC-UCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.