miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 27732 0.66 0.631423
Target:  5'- uCGCaGGaCGAGAUcgacgAGCUGAagGAGCGUg -3'
miRNA:   3'- -GCGaCC-GCUCUA-----UCGGCUg-CUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 28002 0.7 0.36709
Target:  5'- uGCaGGaCGAGAacgacggcgAGCCGaucuacGCGGGCGCCg -3'
miRNA:   3'- gCGaCC-GCUCUa--------UCGGC------UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 30416 0.67 0.577401
Target:  5'- aGCUGGgCGGcgucgacGAUcacGGCCGGCGGGuUGUCg -3'
miRNA:   3'- gCGACC-GCU-------CUA---UCGGCUGCUC-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 30726 0.69 0.438082
Target:  5'- cCGCcgUGGCGAGAgGGUCGA-GGGC-CCg -3'
miRNA:   3'- -GCG--ACCGCUCUaUCGGCUgCUCGcGG- -5'
23909 3' -58.2 NC_005262.1 + 30879 0.7 0.35879
Target:  5'- gCGCUGGCGAGcGUcGCgCGuGCGA-CGCCg -3'
miRNA:   3'- -GCGACCGCUC-UAuCG-GC-UGCUcGCGG- -5'
23909 3' -58.2 NC_005262.1 + 33031 0.67 0.5575
Target:  5'- gCGCgaGGCGAGGUAGgcaucaCGAUcGGCgGCCg -3'
miRNA:   3'- -GCGa-CCGCUCUAUCg-----GCUGcUCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 33634 0.78 0.123683
Target:  5'- cCGCcGGCGcAGGUguccgaGGCUGACGAGCGCg -3'
miRNA:   3'- -GCGaCCGC-UCUA------UCGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 33838 0.66 0.588996
Target:  5'- uCGCUGG-GAGGUccccgAGCUGAuCGAGUggaucaacgacGCCg -3'
miRNA:   3'- -GCGACCgCUCUA-----UCGGCU-GCUCG-----------CGG- -5'
23909 3' -58.2 NC_005262.1 + 34007 0.68 0.476401
Target:  5'- gCGCggacGGCGuGAcgccgGGCCGcauCGuGCGCCg -3'
miRNA:   3'- -GCGa---CCGCuCUa----UCGGCu--GCuCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 34043 0.77 0.137747
Target:  5'- gGCgguugaGGCGGGuUAGCCGG-GAGCGCCg -3'
miRNA:   3'- gCGa-----CCGCUCuAUCGGCUgCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 34122 0.68 0.516311
Target:  5'- uCGCgGGUuGGGcgGGCUGcGCGGGCGCg -3'
miRNA:   3'- -GCGaCCG-CUCuaUCGGC-UGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 35000 0.69 0.436212
Target:  5'- gCGCggGcGCGAGGUcacGGUCGACGuccaucuucacuGCGCCg -3'
miRNA:   3'- -GCGa-C-CGCUCUA---UCGGCUGCu-----------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 35508 0.66 0.599572
Target:  5'- gCGCUuGCGcGcAUAGgCGAC-AGCGCCg -3'
miRNA:   3'- -GCGAcCGCuC-UAUCgGCUGcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 35982 0.66 0.635675
Target:  5'- gGCaccGCGGGAUcgugcguuccacguGCCGcGCGAGUGCCg -3'
miRNA:   3'- gCGac-CGCUCUAu-------------CGGC-UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 36119 0.67 0.578453
Target:  5'- aCGCUGcGCGAuacGGCgaGGCGAGCaccGCCa -3'
miRNA:   3'- -GCGAC-CGCUcuaUCGg-CUGCUCG---CGG- -5'
23909 3' -58.2 NC_005262.1 + 38072 0.71 0.326917
Target:  5'- cCGCUGGCGcGAUcuuGCUGACGuacccguaugGGuCGCCg -3'
miRNA:   3'- -GCGACCGCuCUAu--CGGCUGC----------UC-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 38330 0.69 0.419596
Target:  5'- aGUUGGCGAGcgGcaucGCCucGCGcAGCGCCu -3'
miRNA:   3'- gCGACCGCUCuaU----CGGc-UGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 38546 0.68 0.496175
Target:  5'- gGC-GGCGcAGG-AGCCGGCGuuGCGCg -3'
miRNA:   3'- gCGaCCGC-UCUaUCGGCUGCu-CGCGg -5'
23909 3' -58.2 NC_005262.1 + 39145 0.72 0.290096
Target:  5'- aCGCUGGCGAcGUAGCUGucaGCGGuucgcugaagcGCGCUg -3'
miRNA:   3'- -GCGACCGCUcUAUCGGC---UGCU-----------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 40948 1.12 0.000432
Target:  5'- aCGCUGGCGAGAUAGCCGACGAGCGCCu -3'
miRNA:   3'- -GCGACCGCUCUAUCGGCUGCUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.