miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 41542 0.67 0.578453
Target:  5'- gGCgacGGCGuGAUgcgcaggccGGCCGGCGugggcGGCGCg -3'
miRNA:   3'- gCGa--CCGCuCUA---------UCGGCUGC-----UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 42054 0.66 0.620794
Target:  5'- cCGCUGcGCGAucuu-CCG-UGAGCGCCu -3'
miRNA:   3'- -GCGAC-CGCUcuaucGGCuGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 42120 0.67 0.578453
Target:  5'- aCGUggaUGGCuuGGGAUaAGCCGgucuACGcGGCGCCg -3'
miRNA:   3'- -GCG---ACCG--CUCUA-UCGGC----UGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 42176 0.66 0.588996
Target:  5'- uCGuCUGuaCGuGAUGGgCGACGGcGCGCCg -3'
miRNA:   3'- -GC-GACc-GCuCUAUCgGCUGCU-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 43277 0.75 0.19409
Target:  5'- aGUggGGUGAGGUcGUCG-CGAGCGCCg -3'
miRNA:   3'- gCGa-CCGCUCUAuCGGCuGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 44880 0.7 0.356325
Target:  5'- aCGCUGGCcaaggaccaaGAGAaGGCCGugGucgggacuggaugcGGCGCa -3'
miRNA:   3'- -GCGACCG----------CUCUaUCGGCugC--------------UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 44969 0.69 0.419596
Target:  5'- cCGCcgaGGCGAG--GGCCGACGuGCaGCa -3'
miRNA:   3'- -GCGa--CCGCUCuaUCGGCUGCuCG-CGg -5'
23909 3' -58.2 NC_005262.1 + 45025 0.73 0.256607
Target:  5'- aCGCggcagaUGGCGAGcAUGGggaucaacCCGGCGAGCgGCCg -3'
miRNA:   3'- -GCG------ACCGCUC-UAUC--------GGCUGCUCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 45106 0.66 0.619731
Target:  5'- gCGCUcaacucGGCGGGu--GCCG-CGAacaccgcGCGCCa -3'
miRNA:   3'- -GCGA------CCGCUCuauCGGCuGCU-------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 46147 0.7 0.40159
Target:  5'- gCGCUGGCGGGcgAucucugccugcuGCuCGGCGAgcucGCGCUg -3'
miRNA:   3'- -GCGACCGCUCuaU------------CG-GCUGCU----CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 46630 0.67 0.567952
Target:  5'- aCGCgaugaagGGCacgcuGAUGGCCGACaGcggcagcauGGCGCCg -3'
miRNA:   3'- -GCGa------CCGcu---CUAUCGGCUG-C---------UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 47322 0.75 0.199173
Target:  5'- aGCUGGCGAccGAUucGGCgcucgaGACGcAGCGCCa -3'
miRNA:   3'- gCGACCGCU--CUA--UCGg-----CUGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 47935 0.71 0.319284
Target:  5'- uCGCgu-CGAGGUacauGGCCGuCGAGUGCCg -3'
miRNA:   3'- -GCGaccGCUCUA----UCGGCuGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 47976 0.66 0.588996
Target:  5'- uGCUGgaucgcgagcGCGAGAUGGCUuuuGCcGGUGCCg -3'
miRNA:   3'- gCGAC----------CGCUCUAUCGGc--UGcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 48147 0.66 0.631423
Target:  5'- uCGCggaaGGCGAGGgggauGcCCGACGcguucagccGCGCCu -3'
miRNA:   3'- -GCGa---CCGCUCUau---C-GGCUGCu--------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 48300 0.73 0.256607
Target:  5'- uCGCcGGUGAGcgAGCCGcCGcgcucgguguaAGCGCCg -3'
miRNA:   3'- -GCGaCCGCUCuaUCGGCuGC-----------UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 49078 0.67 0.547103
Target:  5'- uCGCUGccCGAGcaGGCCGuuACGAugGCGCCg -3'
miRNA:   3'- -GCGACc-GCUCuaUCGGC--UGCU--CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 49211 0.69 0.419596
Target:  5'- uGCUGGcCGAGGgcGGCCucGGCGGcGCGCa -3'
miRNA:   3'- gCGACC-GCUCUa-UCGG--CUGCU-CGCGg -5'
23909 3' -58.2 NC_005262.1 + 49240 0.67 0.526503
Target:  5'- cCGC-GGCGAGAcgccuGCCGAUccAGCGCa -3'
miRNA:   3'- -GCGaCCGCUCUau---CGGCUGc-UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 49666 0.7 0.375522
Target:  5'- gGCggcGGCaugGGGAUGGUCGGCGGcGCGCg -3'
miRNA:   3'- gCGa--CCG---CUCUAUCGGCUGCU-CGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.