miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 63074 0.67 0.5575
Target:  5'- uCGCgGGCGAGuAUGcGgCGGCGugcaaGGCGCUg -3'
miRNA:   3'- -GCGaCCGCUC-UAU-CgGCUGC-----UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 62915 0.72 0.303693
Target:  5'- aGCUGGCGcGcaaucucAUGGCaaagGACGAGCGCg -3'
miRNA:   3'- gCGACCGCuC-------UAUCGg---CUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 61745 0.66 0.610174
Target:  5'- aCGCUGGCuGGGAU-GCUcGCuacGCGCCc -3'
miRNA:   3'- -GCGACCG-CUCUAuCGGcUGcu-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 61160 0.83 0.05551
Target:  5'- uCGCggcGGCGGGcgAGCUGACGGGCGCg -3'
miRNA:   3'- -GCGa--CCGCUCuaUCGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 60843 0.68 0.496175
Target:  5'- aCGCgaucGGCGuggcGAUGGCCGAgGcaauGCGCg -3'
miRNA:   3'- -GCGa---CCGCu---CUAUCGGCUgCu---CGCGg -5'
23909 3' -58.2 NC_005262.1 + 60684 0.68 0.476401
Target:  5'- uGCUGGCGAcgcugGGCUucuucGCGGGCGCg -3'
miRNA:   3'- gCGACCGCUcua--UCGGc----UGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 60635 0.71 0.350621
Target:  5'- aCGCUGGCGAG-----CGGCGAGCaCCg -3'
miRNA:   3'- -GCGACCGCUCuaucgGCUGCUCGcGG- -5'
23909 3' -58.2 NC_005262.1 + 60484 0.7 0.36709
Target:  5'- gCGCgaucagGGCGAGAcgccgGGCCGcGCG-GCGCa -3'
miRNA:   3'- -GCGa-----CCGCUCUa----UCGGC-UGCuCGCGg -5'
23909 3' -58.2 NC_005262.1 + 60328 0.7 0.384083
Target:  5'- cCGCaaugGGUGAGGgaGGUCGACGGGCGg- -3'
miRNA:   3'- -GCGa---CCGCUCUa-UCGGCUGCUCGCgg -5'
23909 3' -58.2 NC_005262.1 + 59237 0.74 0.23215
Target:  5'- cCGCUGGCgcGAGAUGcGCCG-CGcGCGCa -3'
miRNA:   3'- -GCGACCG--CUCUAU-CGGCuGCuCGCGg -5'
23909 3' -58.2 NC_005262.1 + 58902 0.68 0.466662
Target:  5'- gCGCUGcGCGAucaGGCCGGCGgcccgaccgauGGCGCg -3'
miRNA:   3'- -GCGAC-CGCUcuaUCGGCUGC-----------UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 58755 0.66 0.631423
Target:  5'- cCGCcgaucaGGCGcc--GGCCGGCGAGCaacuGCCg -3'
miRNA:   3'- -GCGa-----CCGCucuaUCGGCUGCUCG----CGG- -5'
23909 3' -58.2 NC_005262.1 + 58707 0.66 0.599572
Target:  5'- aGCUGGCGGcAUGcCCGA--GGCGCUg -3'
miRNA:   3'- gCGACCGCUcUAUcGGCUgcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 58564 0.67 0.578453
Target:  5'- gGC-GGCGAGA-AGCUGAUcGGCacGCCg -3'
miRNA:   3'- gCGaCCGCUCUaUCGGCUGcUCG--CGG- -5'
23909 3' -58.2 NC_005262.1 + 58329 0.68 0.465693
Target:  5'- aGCUcucgaacGGCGAGGUucGCCG-CGAggucaugccGCGCCg -3'
miRNA:   3'- gCGA-------CCGCUCUAu-CGGCuGCU---------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 58257 0.69 0.419596
Target:  5'- gGCUGGCGGGAUuccccAGCCuGACcgcucuGGCGUa -3'
miRNA:   3'- gCGACCGCUCUA-----UCGG-CUGc-----UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 57483 0.77 0.137747
Target:  5'- gCGCcGaCGAGAggcGGCCGGCGAGCGCa -3'
miRNA:   3'- -GCGaCcGCUCUa--UCGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 57478 0.8 0.084328
Target:  5'- gGUcgagGGCGAGAagccGGCCGACGAGgCGCCg -3'
miRNA:   3'- gCGa---CCGCUCUa---UCGGCUGCUC-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 56958 0.66 0.620794
Target:  5'- gCGCgGGCGAGuucgcgggcGUGGUCGGCaaGAcCGCCu -3'
miRNA:   3'- -GCGaCCGCUC---------UAUCGGCUG--CUcGCGG- -5'
23909 3' -58.2 NC_005262.1 + 56913 0.71 0.318528
Target:  5'- uCGCcGGCGAGAUcaaGGCCGcgcuCGAGaagcgcaCGCCg -3'
miRNA:   3'- -GCGaCCGCUCUA---UCGGCu---GCUC-------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.