miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 56788 0.73 0.238074
Target:  5'- aGCUGGCcggccuGAaGGCCGACGucgagcggcuggAGCGCCu -3'
miRNA:   3'- gCGACCGcu----CUaUCGGCUGC------------UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 56757 0.79 0.096783
Target:  5'- gCGCUGGCGuc--GGgCGACGAGCGCUa -3'
miRNA:   3'- -GCGACCGCucuaUCgGCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 56142 0.71 0.311786
Target:  5'- cCGCUcGCgGAGAUAGCCGuCGccgccGGCGUCg -3'
miRNA:   3'- -GCGAcCG-CUCUAUCGGCuGC-----UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 54425 0.68 0.48624
Target:  5'- gCGgaGGCGcAGGccGCCG-CGcGCGCCg -3'
miRNA:   3'- -GCgaCCGC-UCUauCGGCuGCuCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 52714 0.66 0.625045
Target:  5'- aCGCcGGaCGAGGccgcgcuGCUGACGAaguucacgggcugggGCGCCa -3'
miRNA:   3'- -GCGaCC-GCUCUau-----CGGCUGCU---------------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 52544 0.68 0.5062
Target:  5'- gCGCUGGCGcaggcGAUGGaaaCGAuCGAG-GCCc -3'
miRNA:   3'- -GCGACCGCu----CUAUCg--GCU-GCUCgCGG- -5'
23909 3' -58.2 NC_005262.1 + 52244 0.7 0.357967
Target:  5'- aGC-GcGCGuGAUgcacuucAGCCGGCGAGCgGCCg -3'
miRNA:   3'- gCGaC-CGCuCUA-------UCGGCUGCUCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 51811 0.67 0.526503
Target:  5'- cCGCcucGGCGAcGAcuucagcgcGGCCGACGuGCGCg -3'
miRNA:   3'- -GCGa--CCGCU-CUa--------UCGGCUGCuCGCGg -5'
23909 3' -58.2 NC_005262.1 + 51221 0.75 0.174881
Target:  5'- uCGCcGGCGGcagcagcAGCuCGACGAGCGCCg -3'
miRNA:   3'- -GCGaCCGCUcua----UCG-GCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 50421 0.66 0.610174
Target:  5'- gCGCgcccaGGCGcaGGAUuccguGCUGGCGcAGCGCUu -3'
miRNA:   3'- -GCGa----CCGC--UCUAu----CGGCUGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 50103 0.67 0.536769
Target:  5'- gCGCcGcGCGAacaGA-AGCCGGcCGAGCGCUc -3'
miRNA:   3'- -GCGaC-CGCU---CUaUCGGCU-GCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 49666 0.7 0.375522
Target:  5'- gGCggcGGCaugGGGAUGGUCGGCGGcGCGCg -3'
miRNA:   3'- gCGa--CCG---CUCUAUCGGCUGCU-CGCGg -5'
23909 3' -58.2 NC_005262.1 + 49240 0.67 0.526503
Target:  5'- cCGC-GGCGAGAcgccuGCCGAUccAGCGCa -3'
miRNA:   3'- -GCGaCCGCUCUau---CGGCUGc-UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 49211 0.69 0.419596
Target:  5'- uGCUGGcCGAGGgcGGCCucGGCGGcGCGCa -3'
miRNA:   3'- gCGACC-GCUCUa-UCGG--CUGCU-CGCGg -5'
23909 3' -58.2 NC_005262.1 + 49078 0.67 0.547103
Target:  5'- uCGCUGccCGAGcaGGCCGuuACGAugGCGCCg -3'
miRNA:   3'- -GCGACc-GCUCuaUCGGC--UGCU--CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 48300 0.73 0.256607
Target:  5'- uCGCcGGUGAGcgAGCCGcCGcgcucgguguaAGCGCCg -3'
miRNA:   3'- -GCGaCCGCUCuaUCGGCuGC-----------UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 48147 0.66 0.631423
Target:  5'- uCGCggaaGGCGAGGgggauGcCCGACGcguucagccGCGCCu -3'
miRNA:   3'- -GCGa---CCGCUCUau---C-GGCUGCu--------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 47976 0.66 0.588996
Target:  5'- uGCUGgaucgcgagcGCGAGAUGGCUuuuGCcGGUGCCg -3'
miRNA:   3'- gCGAC----------CGCUCUAUCGGc--UGcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 47935 0.71 0.319284
Target:  5'- uCGCgu-CGAGGUacauGGCCGuCGAGUGCCg -3'
miRNA:   3'- -GCGaccGCUCUA----UCGGCuGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 47322 0.75 0.199173
Target:  5'- aGCUGGCGAccGAUucGGCgcucgaGACGcAGCGCCa -3'
miRNA:   3'- gCGACCGCU--CUA--UCGg-----CUGC-UCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.