miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 46630 0.67 0.567952
Target:  5'- aCGCgaugaagGGCacgcuGAUGGCCGACaGcggcagcauGGCGCCg -3'
miRNA:   3'- -GCGa------CCGcu---CUAUCGGCUG-C---------UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 46147 0.7 0.40159
Target:  5'- gCGCUGGCGGGcgAucucugccugcuGCuCGGCGAgcucGCGCUg -3'
miRNA:   3'- -GCGACCGCUCuaU------------CG-GCUGCU----CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 45106 0.66 0.619731
Target:  5'- gCGCUcaacucGGCGGGu--GCCG-CGAacaccgcGCGCCa -3'
miRNA:   3'- -GCGA------CCGCUCuauCGGCuGCU-------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 45025 0.73 0.256607
Target:  5'- aCGCggcagaUGGCGAGcAUGGggaucaacCCGGCGAGCgGCCg -3'
miRNA:   3'- -GCG------ACCGCUC-UAUC--------GGCUGCUCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 44969 0.69 0.419596
Target:  5'- cCGCcgaGGCGAG--GGCCGACGuGCaGCa -3'
miRNA:   3'- -GCGa--CCGCUCuaUCGGCUGCuCG-CGg -5'
23909 3' -58.2 NC_005262.1 + 44880 0.7 0.356325
Target:  5'- aCGCUGGCcaaggaccaaGAGAaGGCCGugGucgggacuggaugcGGCGCa -3'
miRNA:   3'- -GCGACCG----------CUCUaUCGGCugC--------------UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 43277 0.75 0.19409
Target:  5'- aGUggGGUGAGGUcGUCG-CGAGCGCCg -3'
miRNA:   3'- gCGa-CCGCUCUAuCGGCuGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 42176 0.66 0.588996
Target:  5'- uCGuCUGuaCGuGAUGGgCGACGGcGCGCCg -3'
miRNA:   3'- -GC-GACc-GCuCUAUCgGCUGCU-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 42120 0.67 0.578453
Target:  5'- aCGUggaUGGCuuGGGAUaAGCCGgucuACGcGGCGCCg -3'
miRNA:   3'- -GCG---ACCG--CUCUA-UCGGC----UGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 42054 0.66 0.620794
Target:  5'- cCGCUGcGCGAucuu-CCG-UGAGCGCCu -3'
miRNA:   3'- -GCGAC-CGCUcuaucGGCuGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 41542 0.67 0.578453
Target:  5'- gGCgacGGCGuGAUgcgcaggccGGCCGGCGugggcGGCGCg -3'
miRNA:   3'- gCGa--CCGCuCUA---------UCGGCUGC-----UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 40948 1.12 0.000432
Target:  5'- aCGCUGGCGAGAUAGCCGACGAGCGCCu -3'
miRNA:   3'- -GCGACCGCUCUAUCGGCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 39145 0.72 0.290096
Target:  5'- aCGCUGGCGAcGUAGCUGucaGCGGuucgcugaagcGCGCUg -3'
miRNA:   3'- -GCGACCGCUcUAUCGGC---UGCU-----------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 38546 0.68 0.496175
Target:  5'- gGC-GGCGcAGG-AGCCGGCGuuGCGCg -3'
miRNA:   3'- gCGaCCGC-UCUaUCGGCUGCu-CGCGg -5'
23909 3' -58.2 NC_005262.1 + 38330 0.69 0.419596
Target:  5'- aGUUGGCGAGcgGcaucGCCucGCGcAGCGCCu -3'
miRNA:   3'- gCGACCGCUCuaU----CGGc-UGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 38072 0.71 0.326917
Target:  5'- cCGCUGGCGcGAUcuuGCUGACGuacccguaugGGuCGCCg -3'
miRNA:   3'- -GCGACCGCuCUAu--CGGCUGC----------UC-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 36119 0.67 0.578453
Target:  5'- aCGCUGcGCGAuacGGCgaGGCGAGCaccGCCa -3'
miRNA:   3'- -GCGAC-CGCUcuaUCGg-CUGCUCG---CGG- -5'
23909 3' -58.2 NC_005262.1 + 35982 0.66 0.635675
Target:  5'- gGCaccGCGGGAUcgugcguuccacguGCCGcGCGAGUGCCg -3'
miRNA:   3'- gCGac-CGCUCUAu-------------CGGC-UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 35508 0.66 0.599572
Target:  5'- gCGCUuGCGcGcAUAGgCGAC-AGCGCCg -3'
miRNA:   3'- -GCGAcCGCuC-UAUCgGCUGcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 35000 0.69 0.436212
Target:  5'- gCGCggGcGCGAGGUcacGGUCGACGuccaucuucacuGCGCCg -3'
miRNA:   3'- -GCGa-C-CGCUCUA---UCGGCUGCu-----------CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.