miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 17913 0.7 0.384083
Target:  5'- ---cGGCGAGcc-GCCGAUcGGCGCCg -3'
miRNA:   3'- gcgaCCGCUCuauCGGCUGcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 56913 0.71 0.318528
Target:  5'- uCGCcGGCGAGAUcaaGGCCGcgcuCGAGaagcgcaCGCCg -3'
miRNA:   3'- -GCGaCCGCUCUA---UCGGCu---GCUC-------GCGG- -5'
23909 3' -58.2 NC_005262.1 + 6552 0.71 0.319284
Target:  5'- gGCUucGGCGuGuugccGCCGACGAGCGgCg -3'
miRNA:   3'- gCGA--CCGCuCuau--CGGCUGCUCGCgG- -5'
23909 3' -58.2 NC_005262.1 + 38072 0.71 0.326917
Target:  5'- cCGCUGGCGcGAUcuuGCUGACGuacccguaugGGuCGCCg -3'
miRNA:   3'- -GCGACCGCuCUAu--CGGCUGC----------UC-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 23483 0.71 0.350621
Target:  5'- gGCUgGGCGAGGUucgcccGCUGACGcccgaggagcuGCGCCa -3'
miRNA:   3'- gCGA-CCGCUCUAu-----CGGCUGCu----------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 60635 0.71 0.350621
Target:  5'- aCGCUGGCGAG-----CGGCGAGCaCCg -3'
miRNA:   3'- -GCGACCGCUCuaucgGCUGCUCGcGG- -5'
23909 3' -58.2 NC_005262.1 + 28002 0.7 0.36709
Target:  5'- uGCaGGaCGAGAacgacggcgAGCCGaucuacGCGGGCGCCg -3'
miRNA:   3'- gCGaCC-GCUCUa--------UCGGC------UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 60484 0.7 0.36709
Target:  5'- gCGCgaucagGGCGAGAcgccgGGCCGcGCG-GCGCa -3'
miRNA:   3'- -GCGa-----CCGCUCUa----UCGGC-UGCuCGCGg -5'
23909 3' -58.2 NC_005262.1 + 49666 0.7 0.375522
Target:  5'- gGCggcGGCaugGGGAUGGUCGGCGGcGCGCg -3'
miRNA:   3'- gCGa--CCG---CUCUAUCGGCUGCU-CGCGg -5'
23909 3' -58.2 NC_005262.1 + 62915 0.72 0.303693
Target:  5'- aGCUGGCGcGcaaucucAUGGCaaagGACGAGCGCg -3'
miRNA:   3'- gCGACCGCuC-------UAUCGg---CUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 39145 0.72 0.290096
Target:  5'- aCGCUGGCGAcGUAGCUGucaGCGGuucgcugaagcGCGCUg -3'
miRNA:   3'- -GCGACCGCUcUAUCGGC---UGCU-----------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 45025 0.73 0.256607
Target:  5'- aCGCggcagaUGGCGAGcAUGGggaucaacCCGGCGAGCgGCCg -3'
miRNA:   3'- -GCG------ACCGCUC-UAUC--------GGCUGCUCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 10313 0.8 0.084328
Target:  5'- gGCUGGCuGAGAUcGUCGACGAGCaCCu -3'
miRNA:   3'- gCGACCG-CUCUAuCGGCUGCUCGcGG- -5'
23909 3' -58.2 NC_005262.1 + 57478 0.8 0.084328
Target:  5'- gGUcgagGGCGAGAagccGGCCGACGAGgCGCCg -3'
miRNA:   3'- gCGa---CCGCUCUa---UCGGCUGCUC-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 56757 0.79 0.096783
Target:  5'- gCGCUGGCGuc--GGgCGACGAGCGCUa -3'
miRNA:   3'- -GCGACCGCucuaUCgGCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 33634 0.78 0.123683
Target:  5'- cCGCcGGCGcAGGUguccgaGGCUGACGAGCGCg -3'
miRNA:   3'- -GCGaCCGC-UCUA------UCGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 47322 0.75 0.199173
Target:  5'- aGCUGGCGAccGAUucGGCgcucgaGACGcAGCGCCa -3'
miRNA:   3'- gCGACCGCU--CUA--UCGg-----CUGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 12590 0.74 0.220675
Target:  5'- cCGCcGGCGAGGcgucGCgGAUGAGCGCg -3'
miRNA:   3'- -GCGaCCGCUCUau--CGgCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 56788 0.73 0.238074
Target:  5'- aGCUGGCcggccuGAaGGCCGACGucgagcggcuggAGCGCCu -3'
miRNA:   3'- gCGACCGcu----CUaUCGGCUGC------------UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 24929 0.73 0.243514
Target:  5'- gGCaUGGCGGGAUGcgcacauGCCGcGCGGcGCGCCc -3'
miRNA:   3'- gCG-ACCGCUCUAU-------CGGC-UGCU-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.