miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 61160 0.83 0.05551
Target:  5'- uCGCggcGGCGGGcgAGCUGACGGGCGCg -3'
miRNA:   3'- -GCGa--CCGCUCuaUCGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 56913 0.71 0.318528
Target:  5'- uCGCcGGCGAGAUcaaGGCCGcgcuCGAGaagcgcaCGCCg -3'
miRNA:   3'- -GCGaCCGCUCUA---UCGGCu---GCUC-------GCGG- -5'
23909 3' -58.2 NC_005262.1 + 6552 0.71 0.319284
Target:  5'- gGCUucGGCGuGuugccGCCGACGAGCGgCg -3'
miRNA:   3'- gCGA--CCGCuCuau--CGGCUGCUCGCgG- -5'
23909 3' -58.2 NC_005262.1 + 58902 0.68 0.466662
Target:  5'- gCGCUGcGCGAucaGGCCGGCGgcccgaccgauGGCGCg -3'
miRNA:   3'- -GCGAC-CGCUcuaUCGGCUGC-----------UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 2908 0.69 0.438082
Target:  5'- gGCUGGUGAGGUucaucuGGUCGGCGcaguAGUGUg -3'
miRNA:   3'- gCGACCGCUCUA------UCGGCUGC----UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 44969 0.69 0.419596
Target:  5'- cCGCcgaGGCGAG--GGCCGACGuGCaGCa -3'
miRNA:   3'- -GCGa--CCGCUCuaUCGGCUGCuCG-CGg -5'
23909 3' -58.2 NC_005262.1 + 58257 0.69 0.419596
Target:  5'- gGCUGGCGGGAUuccccAGCCuGACcgcucuGGCGUa -3'
miRNA:   3'- gCGACCGCUCUA-----UCGG-CUGc-----UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 49211 0.69 0.419596
Target:  5'- uGCUGGcCGAGGgcGGCCucGGCGGcGCGCa -3'
miRNA:   3'- gCGACC-GCUCUa-UCGG--CUGCU-CGCGg -5'
23909 3' -58.2 NC_005262.1 + 17913 0.7 0.384083
Target:  5'- ---cGGCGAGcc-GCCGAUcGGCGCCg -3'
miRNA:   3'- gcgaCCGCUCuauCGGCUGcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 49666 0.7 0.375522
Target:  5'- gGCggcGGCaugGGGAUGGUCGGCGGcGCGCg -3'
miRNA:   3'- gCGa--CCG---CUCUAUCGGCUGCU-CGCGg -5'
23909 3' -58.2 NC_005262.1 + 60484 0.7 0.36709
Target:  5'- gCGCgaucagGGCGAGAcgccgGGCCGcGCG-GCGCa -3'
miRNA:   3'- -GCGa-----CCGCUCUa----UCGGC-UGCuCGCGg -5'
23909 3' -58.2 NC_005262.1 + 28002 0.7 0.36709
Target:  5'- uGCaGGaCGAGAacgacggcgAGCCGaucuacGCGGGCGCCg -3'
miRNA:   3'- gCGaCC-GCUCUa--------UCGGC------UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 60635 0.71 0.350621
Target:  5'- aCGCUGGCGAG-----CGGCGAGCaCCg -3'
miRNA:   3'- -GCGACCGCUCuaucgGCUGCUCGcGG- -5'
23909 3' -58.2 NC_005262.1 + 23483 0.71 0.350621
Target:  5'- gGCUgGGCGAGGUucgcccGCUGACGcccgaggagcuGCGCCa -3'
miRNA:   3'- gCGA-CCGCUCUAu-----CGGCUGCu----------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 38072 0.71 0.326917
Target:  5'- cCGCUGGCGcGAUcuuGCUGACGuacccguaugGGuCGCCg -3'
miRNA:   3'- -GCGACCGCuCUAu--CGGCUGC----------UC-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 42054 0.66 0.620794
Target:  5'- cCGCUGcGCGAucuu-CCG-UGAGCGCCu -3'
miRNA:   3'- -GCGAC-CGCUcuaucGGCuGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 14017 0.66 0.631423
Target:  5'- gGCguccGGCGcGGcagcGGCCGgagccucgggcGCGGGCGCCg -3'
miRNA:   3'- gCGa---CCGCuCUa---UCGGC-----------UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 48147 0.66 0.631423
Target:  5'- uCGCggaaGGCGAGGgggauGcCCGACGcguucagccGCGCCu -3'
miRNA:   3'- -GCGa---CCGCUCUau---C-GGCUGCu--------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 58755 0.66 0.631423
Target:  5'- cCGCcgaucaGGCGcc--GGCCGGCGAGCaacuGCCg -3'
miRNA:   3'- -GCGa-----CCGCucuaUCGGCUGCUCG----CGG- -5'
23909 3' -58.2 NC_005262.1 + 40948 1.12 0.000432
Target:  5'- aCGCUGGCGAGAUAGCCGACGAGCGCCu -3'
miRNA:   3'- -GCGACCGCUCUAUCGGCUGCUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.