miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 10633 0.67 0.536769
Target:  5'- aCGCgaagGGCGGGuu-GCCGAuCGccGCGUCg -3'
miRNA:   3'- -GCGa---CCGCUCuauCGGCU-GCu-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 49240 0.67 0.526503
Target:  5'- cCGC-GGCGAGAcgccuGCCGAUccAGCGCa -3'
miRNA:   3'- -GCGaCCGCUCUau---CGGCUGc-UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 1033 0.67 0.526503
Target:  5'- uCGCUGGCGAcccacguGCCGAaugcugcGGCGCUg -3'
miRNA:   3'- -GCGACCGCUcuau---CGGCUgc-----UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 3844 0.67 0.526503
Target:  5'- aGCgGGCGAaucuGCUucGCGAGCGCCu -3'
miRNA:   3'- gCGaCCGCUcuauCGGc-UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 34122 0.68 0.516311
Target:  5'- uCGCgGGUuGGGcgGGCUGcGCGGGCGCg -3'
miRNA:   3'- -GCGaCCG-CUCuaUCGGC-UGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 16062 0.68 0.515297
Target:  5'- gGCcGGCGgcgcaccAGAUacAGgCGGCGAGcCGCCg -3'
miRNA:   3'- gCGaCCGC-------UCUA--UCgGCUGCUC-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 13459 0.67 0.574247
Target:  5'- uCGCgGGCGcuucguccuGCgCGGCGGGCGCUg -3'
miRNA:   3'- -GCGaCCGCucuau----CG-GCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 30416 0.67 0.577401
Target:  5'- aGCUGGgCGGcgucgacGAUcacGGCCGGCGGGuUGUCg -3'
miRNA:   3'- gCGACC-GCU-------CUA---UCGGCUGCUC-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 41542 0.67 0.578453
Target:  5'- gGCgacGGCGuGAUgcgcaggccGGCCGGCGugggcGGCGCg -3'
miRNA:   3'- gCGa--CCGCuCUA---------UCGGCUGC-----UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 40948 1.12 0.000432
Target:  5'- aCGCUGGCGAGAUAGCCGACGAGCGCCu -3'
miRNA:   3'- -GCGACCGCUCUAUCGGCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 58755 0.66 0.631423
Target:  5'- cCGCcgaucaGGCGcc--GGCCGGCGAGCaacuGCCg -3'
miRNA:   3'- -GCGa-----CCGCucuaUCGGCUGCUCG----CGG- -5'
23909 3' -58.2 NC_005262.1 + 48147 0.66 0.631423
Target:  5'- uCGCggaaGGCGAGGgggauGcCCGACGcguucagccGCGCCu -3'
miRNA:   3'- -GCGa---CCGCUCUau---C-GGCUGCu--------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 14017 0.66 0.631423
Target:  5'- gGCguccGGCGcGGcagcGGCCGgagccucgggcGCGGGCGCCg -3'
miRNA:   3'- gCGa---CCGCuCUa---UCGGC-----------UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 42054 0.66 0.620794
Target:  5'- cCGCUGcGCGAucuu-CCG-UGAGCGCCu -3'
miRNA:   3'- -GCGAC-CGCUcuaucGGCuGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 4942 0.66 0.620794
Target:  5'- gCGCcGGCGuGAcgucGCCGAucugcgugcCGAaGCGCCg -3'
miRNA:   3'- -GCGaCCGCuCUau--CGGCU---------GCU-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 61745 0.66 0.610174
Target:  5'- aCGCUGGCuGGGAU-GCUcGCuacGCGCCc -3'
miRNA:   3'- -GCGACCG-CUCUAuCGGcUGcu-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 50421 0.66 0.610174
Target:  5'- gCGCgcccaGGCGcaGGAUuccguGCUGGCGcAGCGCUu -3'
miRNA:   3'- -GCGa----CCGC--UCUAu----CGGCUGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 4393 0.66 0.599572
Target:  5'- gCGUUGcGCGugcGAUGucgcgcgccuGCUGcGCGAGCGCCu -3'
miRNA:   3'- -GCGAC-CGCu--CUAU----------CGGC-UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 35508 0.66 0.599572
Target:  5'- gCGCUuGCGcGcAUAGgCGAC-AGCGCCg -3'
miRNA:   3'- -GCGAcCGCuC-UAUCgGCUGcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 47976 0.66 0.588996
Target:  5'- uGCUGgaucgcgagcGCGAGAUGGCUuuuGCcGGUGCCg -3'
miRNA:   3'- gCGAC----------CGCUCUAUCGGc--UGcUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.