miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 3844 0.67 0.526503
Target:  5'- aGCgGGCGAaucuGCUucGCGAGCGCCu -3'
miRNA:   3'- gCGaCCGCUcuauCGGc-UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 10633 0.67 0.536769
Target:  5'- aCGCgaagGGCGGGuu-GCCGAuCGccGCGUCg -3'
miRNA:   3'- -GCGa---CCGCUCuauCGGCU-GCu-CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 47976 0.66 0.588996
Target:  5'- uGCUGgaucgcgagcGCGAGAUGGCUuuuGCcGGUGCCg -3'
miRNA:   3'- gCGAC----------CGCUCUAUCGGc--UGcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 14017 0.66 0.631423
Target:  5'- gGCguccGGCGcGGcagcGGCCGgagccucgggcGCGGGCGCCg -3'
miRNA:   3'- gCGa---CCGCuCUa---UCGGC-----------UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 23823 0.69 0.438082
Target:  5'- gGUUGGUcaucucauGGgcGCCGGCGAGCGCa -3'
miRNA:   3'- gCGACCGcu------CUauCGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 9196 0.68 0.500175
Target:  5'- aGCc-GCGAGuuGUAGCUGACGucgaucuucucguucAGCGCCu -3'
miRNA:   3'- gCGacCGCUC--UAUCGGCUGC---------------UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 20176 0.67 0.5575
Target:  5'- -uCUGcGCcGGu--GCCGGCGAGCGUCa -3'
miRNA:   3'- gcGAC-CGcUCuauCGGCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 48147 0.66 0.631423
Target:  5'- uCGCggaaGGCGAGGgggauGcCCGACGcguucagccGCGCCu -3'
miRNA:   3'- -GCGa---CCGCUCUau---C-GGCUGCu--------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 9667 0.68 0.5062
Target:  5'- uGCUcGaGCGAG-UAGgCGA-GGGCGCCg -3'
miRNA:   3'- gCGA-C-CGCUCuAUCgGCUgCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 58755 0.66 0.631423
Target:  5'- cCGCcgaucaGGCGcc--GGCCGGCGAGCaacuGCCg -3'
miRNA:   3'- -GCGa-----CCGCucuaUCGGCUGCUCG----CGG- -5'
23909 3' -58.2 NC_005262.1 + 18937 0.67 0.547103
Target:  5'- gCGCUGGCGGuccucGcgGGCCcACGAuuCGCCu -3'
miRNA:   3'- -GCGACCGCU-----CuaUCGGcUGCUc-GCGG- -5'
23909 3' -58.2 NC_005262.1 + 34122 0.68 0.516311
Target:  5'- uCGCgGGUuGGGcgGGCUGcGCGGGCGCg -3'
miRNA:   3'- -GCGaCCG-CUCuaUCGGC-UGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 13709 0.67 0.567952
Target:  5'- gCGC-GGCGcGGGUucGGUCGGCGcAGCgGCCu -3'
miRNA:   3'- -GCGaCCGC-UCUA--UCGGCUGC-UCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 41542 0.67 0.578453
Target:  5'- gGCgacGGCGuGAUgcgcaggccGGCCGGCGugggcGGCGCg -3'
miRNA:   3'- gCGa--CCGCuCUA---------UCGGCUGC-----UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 50421 0.66 0.610174
Target:  5'- gCGCgcccaGGCGcaGGAUuccguGCUGGCGcAGCGCUu -3'
miRNA:   3'- -GCGa----CCGC--UCUAu----CGGCUGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 42054 0.66 0.620794
Target:  5'- cCGCUGcGCGAucuu-CCG-UGAGCGCCu -3'
miRNA:   3'- -GCGAC-CGCUcuaucGGCuGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 21362 0.7 0.392773
Target:  5'- gCGCUGcuuCGuGAUguugcGGCCGGCuGGCGCCg -3'
miRNA:   3'- -GCGACc--GCuCUA-----UCGGCUGcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 35000 0.69 0.436212
Target:  5'- gCGCggGcGCGAGGUcacGGUCGACGuccaucuucacuGCGCCg -3'
miRNA:   3'- -GCGa-C-CGCUCUA---UCGGCUGCu-----------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 24360 0.68 0.48624
Target:  5'- uGCgUGGCGAGGUAauCCGA-GAGCagGCCg -3'
miRNA:   3'- gCG-ACCGCUCUAUc-GGCUgCUCG--CGG- -5'
23909 3' -58.2 NC_005262.1 + 38546 0.68 0.496175
Target:  5'- gGC-GGCGcAGG-AGCCGGCGuuGCGCg -3'
miRNA:   3'- gCGaCCGC-UCUaUCGGCUGCu-CGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.