miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 3' -58.2 NC_005262.1 + 34122 0.68 0.516311
Target:  5'- uCGCgGGUuGGGcgGGCUGcGCGGGCGCg -3'
miRNA:   3'- -GCGaCCG-CUCuaUCGGC-UGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 4393 0.66 0.599572
Target:  5'- gCGUUGcGCGugcGAUGucgcgcgccuGCUGcGCGAGCGCCu -3'
miRNA:   3'- -GCGAC-CGCu--CUAU----------CGGC-UGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 21362 0.7 0.392773
Target:  5'- gCGCUGcuuCGuGAUguugcGGCCGGCuGGCGCCg -3'
miRNA:   3'- -GCGACc--GCuCUA-----UCGGCUGcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 50421 0.66 0.610174
Target:  5'- gCGCgcccaGGCGcaGGAUuccguGCUGGCGcAGCGCUu -3'
miRNA:   3'- -GCGa----CCGC--UCUAu----CGGCUGC-UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 47976 0.66 0.588996
Target:  5'- uGCUGgaucgcgagcGCGAGAUGGCUuuuGCcGGUGCCg -3'
miRNA:   3'- gCGAC----------CGCUCUAUCGGc--UGcUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 13459 0.67 0.574247
Target:  5'- uCGCgGGCGcuucguccuGCgCGGCGGGCGCUg -3'
miRNA:   3'- -GCGaCCGCucuau----CG-GCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 10458 0.74 0.226351
Target:  5'- gCGCggucGGCGAGGUAG-CGGCGcGCGCg -3'
miRNA:   3'- -GCGa---CCGCUCUAUCgGCUGCuCGCGg -5'
23909 3' -58.2 NC_005262.1 + 56142 0.71 0.311786
Target:  5'- cCGCUcGCgGAGAUAGCCGuCGccgccGGCGUCg -3'
miRNA:   3'- -GCGAcCG-CUCUAUCGGCuGC-----UCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 52244 0.7 0.357967
Target:  5'- aGC-GcGCGuGAUgcacuucAGCCGGCGAGCgGCCg -3'
miRNA:   3'- gCGaC-CGCuCUA-------UCGGCUGCUCG-CGG- -5'
23909 3' -58.2 NC_005262.1 + 35000 0.69 0.436212
Target:  5'- gCGCggGcGCGAGGUcacGGUCGACGuccaucuucacuGCGCCg -3'
miRNA:   3'- -GCGa-C-CGCUCUA---UCGGCUGCu-----------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 58329 0.68 0.465693
Target:  5'- aGCUcucgaacGGCGAGGUucGCCG-CGAggucaugccGCGCCg -3'
miRNA:   3'- gCGA-------CCGCUCUAu-CGGCuGCU---------CGCGG- -5'
23909 3' -58.2 NC_005262.1 + 38546 0.68 0.496175
Target:  5'- gGC-GGCGcAGG-AGCCGGCGuuGCGCg -3'
miRNA:   3'- gCGaCCGC-UCUaUCGGCUGCu-CGCGg -5'
23909 3' -58.2 NC_005262.1 + 27459 0.68 0.5062
Target:  5'- ---aGGUcaGAGAUcagcuuuGCCGGCGAGCGCa -3'
miRNA:   3'- gcgaCCG--CUCUAu------CGGCUGCUCGCGg -5'
23909 3' -58.2 NC_005262.1 + 49240 0.67 0.526503
Target:  5'- cCGC-GGCGAGAcgccuGCCGAUccAGCGCa -3'
miRNA:   3'- -GCGaCCGCUCUau---CGGCUGc-UCGCGg -5'
23909 3' -58.2 NC_005262.1 + 20176 0.67 0.5575
Target:  5'- -uCUGcGCcGGu--GCCGGCGAGCGUCa -3'
miRNA:   3'- gcGAC-CGcUCuauCGGCUGCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 17224 0.75 0.19409
Target:  5'- gCGCUGGCGucGUGGUCGucgUGGGCGUCg -3'
miRNA:   3'- -GCGACCGCucUAUCGGCu--GCUCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 13965 0.68 0.476401
Target:  5'- cCGCUGGUGcaccAGggGGCCGGUGGGCGa- -3'
miRNA:   3'- -GCGACCGC----UCuaUCGGCUGCUCGCgg -5'
23909 3' -58.2 NC_005262.1 + 34007 0.68 0.476401
Target:  5'- gCGCggacGGCGuGAcgccgGGCCGcauCGuGCGCCg -3'
miRNA:   3'- -GCGa---CCGCuCUa----UCGGCu--GCuCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 54425 0.68 0.48624
Target:  5'- gCGgaGGCGcAGGccGCCG-CGcGCGCCg -3'
miRNA:   3'- -GCgaCCGC-UCUauCGGCuGCuCGCGG- -5'
23909 3' -58.2 NC_005262.1 + 38072 0.71 0.326917
Target:  5'- cCGCUGGCGcGAUcuuGCUGACGuacccguaugGGuCGCCg -3'
miRNA:   3'- -GCGACCGCuCUAu--CGGCUGC----------UC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.