miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23909 5' -55.3 NC_005262.1 + 22412 0.66 0.780607
Target:  5'- uGAAGcGGUCGCGuaGGUCAgcCGUGCCGu -3'
miRNA:   3'- -CUUCaUCAGCGCc-UCGGU--GUACGGCc -5'
23909 5' -55.3 NC_005262.1 + 51156 0.66 0.780607
Target:  5'- uGAAGaAGUCGCcGAGCgCGCAgcaggcaGCCGa -3'
miRNA:   3'- -CUUCaUCAGCGcCUCG-GUGUa------CGGCc -5'
23909 5' -55.3 NC_005262.1 + 17703 0.66 0.780607
Target:  5'- --cGUGGUCGCuGGcccgaacgAGCC-CGaGCCGGa -3'
miRNA:   3'- cuuCAUCAGCG-CC--------UCGGuGUaCGGCC- -5'
23909 5' -55.3 NC_005262.1 + 36854 0.66 0.740149
Target:  5'- gGAuGUGGUCGCGGAuagGCgGCGaauccgGCuCGGg -3'
miRNA:   3'- -CUuCAUCAGCGCCU---CGgUGUa-----CG-GCC- -5'
23909 5' -55.3 NC_005262.1 + 51564 0.66 0.740149
Target:  5'- --cGUGGUcgcgCGCGGAGCUugAgcgcGCCGc -3'
miRNA:   3'- cuuCAUCA----GCGCCUCGGugUa---CGGCc -5'
23909 5' -55.3 NC_005262.1 + 37824 0.66 0.739112
Target:  5'- -cGGgcGUCGaCGGGuauuccuGCCACAuacguuccucguUGCCGGa -3'
miRNA:   3'- cuUCauCAGC-GCCU-------CGGUGU------------ACGGCC- -5'
23909 5' -55.3 NC_005262.1 + 6346 0.66 0.72974
Target:  5'- --uGUAGUCGCGGcagAGCUcgaACAcGCgCGGa -3'
miRNA:   3'- cuuCAUCAGCGCC---UCGG---UGUaCG-GCC- -5'
23909 5' -55.3 NC_005262.1 + 2766 0.66 0.72974
Target:  5'- cGAAGUGGUUGCGGuuAGCagACGUcUCGGc -3'
miRNA:   3'- -CUUCAUCAGCGCC--UCGg-UGUAcGGCC- -5'
23909 5' -55.3 NC_005262.1 + 15790 0.67 0.697987
Target:  5'- uGGGUguuGGUCGCGGGG----GUGCCGGg -3'
miRNA:   3'- cUUCA---UCAGCGCCUCggugUACGGCC- -5'
23909 5' -55.3 NC_005262.1 + 28155 0.67 0.687263
Target:  5'- cGAGUAGcccaUCGCcc-GCCGCGUGCCGu -3'
miRNA:   3'- cUUCAUC----AGCGccuCGGUGUACGGCc -5'
23909 5' -55.3 NC_005262.1 + 6671 0.67 0.676488
Target:  5'- cGAuGUAcUCGcCGGAGCCcuugagcuGCGUGCCGu -3'
miRNA:   3'- -CUuCAUcAGC-GCCUCGG--------UGUACGGCc -5'
23909 5' -55.3 NC_005262.1 + 34722 0.67 0.66242
Target:  5'- cGAAGUGGUucaCGCaggucGAGCCGaacacggugcgcguCGUGCCGGc -3'
miRNA:   3'- -CUUCAUCA---GCGc----CUCGGU--------------GUACGGCC- -5'
23909 5' -55.3 NC_005262.1 + 12432 0.68 0.640694
Target:  5'- --cGgcGUCGCGGAcggcgcggugccgaGCUGCAUGgCGGa -3'
miRNA:   3'- cuuCauCAGCGCCU--------------CGGUGUACgGCC- -5'
23909 5' -55.3 NC_005262.1 + 11169 0.68 0.622199
Target:  5'- ----cGGUCGCGc-GCCACGaGCCGGu -3'
miRNA:   3'- cuucaUCAGCGCcuCGGUGUaCGGCC- -5'
23909 5' -55.3 NC_005262.1 + 43813 0.69 0.578858
Target:  5'- -cGGgcGaUCGCGGcgacacGGCCGCggGCCGGc -3'
miRNA:   3'- cuUCauC-AGCGCC------UCGGUGuaCGGCC- -5'
23909 5' -55.3 NC_005262.1 + 9978 0.69 0.568109
Target:  5'- -----cGUCGCGGAGCCgaucgaGCcUGCUGGc -3'
miRNA:   3'- cuucauCAGCGCCUCGG------UGuACGGCC- -5'
23909 5' -55.3 NC_005262.1 + 26645 0.69 0.546772
Target:  5'- --cGUGGUCGUagGGAGCC-CAU-CCGGc -3'
miRNA:   3'- cuuCAUCAGCG--CCUCGGuGUAcGGCC- -5'
23909 5' -55.3 NC_005262.1 + 38543 0.7 0.519433
Target:  5'- ----cGGUCGCGGugacgaucggcaccGCCGCggGCCGGa -3'
miRNA:   3'- cuucaUCAGCGCCu-------------CGGUGuaCGGCC- -5'
23909 5' -55.3 NC_005262.1 + 17245 0.72 0.398192
Target:  5'- -uGGgcGUCGCgGGAGCgGCG-GCCGGc -3'
miRNA:   3'- cuUCauCAGCG-CCUCGgUGUaCGGCC- -5'
23909 5' -55.3 NC_005262.1 + 22907 0.74 0.33023
Target:  5'- -cGGUGGUCgguucucguguGCGGuGCCGC-UGCCGGc -3'
miRNA:   3'- cuUCAUCAG-----------CGCCuCGGUGuACGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.