Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23909 | 5' | -55.3 | NC_005262.1 | + | 40982 | 1.1 | 0.001019 |
Target: 5'- cGAAGUAGUCGCGGAGCCACAUGCCGGu -3' miRNA: 3'- -CUUCAUCAGCGCCUCGGUGUACGGCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 32833 | 0.78 | 0.188692 |
Target: 5'- cGAGGUAGUCGCccgccugcgGGAaguagcgcGCCGuCAUGCCGGa -3' miRNA: 3'- -CUUCAUCAGCG---------CCU--------CGGU-GUACGGCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 38038 | 0.77 | 0.220974 |
Target: 5'- -cGGUAGUCGCGGgccgugAGCgGCuUGCCGGc -3' miRNA: 3'- cuUCAUCAGCGCC------UCGgUGuACGGCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 22907 | 0.74 | 0.33023 |
Target: 5'- -cGGUGGUCgguucucguguGCGGuGCCGC-UGCCGGc -3' miRNA: 3'- cuUCAUCAG-----------CGCCuCGGUGuACGGCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 17245 | 0.72 | 0.398192 |
Target: 5'- -uGGgcGUCGCgGGAGCgGCG-GCCGGc -3' miRNA: 3'- cuUCauCAGCG-CCUCGgUGUaCGGCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 38543 | 0.7 | 0.519433 |
Target: 5'- ----cGGUCGCGGugacgaucggcaccGCCGCggGCCGGa -3' miRNA: 3'- cuucaUCAGCGCCu-------------CGGUGuaCGGCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 26645 | 0.69 | 0.546772 |
Target: 5'- --cGUGGUCGUagGGAGCC-CAU-CCGGc -3' miRNA: 3'- cuuCAUCAGCG--CCUCGGuGUAcGGCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 9978 | 0.69 | 0.568109 |
Target: 5'- -----cGUCGCGGAGCCgaucgaGCcUGCUGGc -3' miRNA: 3'- cuucauCAGCGCCUCGG------UGuACGGCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 43813 | 0.69 | 0.578858 |
Target: 5'- -cGGgcGaUCGCGGcgacacGGCCGCggGCCGGc -3' miRNA: 3'- cuUCauC-AGCGCC------UCGGUGuaCGGCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 11169 | 0.68 | 0.622199 |
Target: 5'- ----cGGUCGCGc-GCCACGaGCCGGu -3' miRNA: 3'- cuucaUCAGCGCcuCGGUGUaCGGCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 12432 | 0.68 | 0.640694 |
Target: 5'- --cGgcGUCGCGGAcggcgcggugccgaGCUGCAUGgCGGa -3' miRNA: 3'- cuuCauCAGCGCCU--------------CGGUGUACgGCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 34722 | 0.67 | 0.66242 |
Target: 5'- cGAAGUGGUucaCGCaggucGAGCCGaacacggugcgcguCGUGCCGGc -3' miRNA: 3'- -CUUCAUCA---GCGc----CUCGGU--------------GUACGGCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 6671 | 0.67 | 0.676488 |
Target: 5'- cGAuGUAcUCGcCGGAGCCcuugagcuGCGUGCCGu -3' miRNA: 3'- -CUuCAUcAGC-GCCUCGG--------UGUACGGCc -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 28155 | 0.67 | 0.687263 |
Target: 5'- cGAGUAGcccaUCGCcc-GCCGCGUGCCGu -3' miRNA: 3'- cUUCAUC----AGCGccuCGGUGUACGGCc -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 15790 | 0.67 | 0.697987 |
Target: 5'- uGGGUguuGGUCGCGGGG----GUGCCGGg -3' miRNA: 3'- cUUCA---UCAGCGCCUCggugUACGGCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 6346 | 0.66 | 0.72974 |
Target: 5'- --uGUAGUCGCGGcagAGCUcgaACAcGCgCGGa -3' miRNA: 3'- cuuCAUCAGCGCC---UCGG---UGUaCG-GCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 2766 | 0.66 | 0.72974 |
Target: 5'- cGAAGUGGUUGCGGuuAGCagACGUcUCGGc -3' miRNA: 3'- -CUUCAUCAGCGCC--UCGg-UGUAcGGCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 37824 | 0.66 | 0.739112 |
Target: 5'- -cGGgcGUCGaCGGGuauuccuGCCACAuacguuccucguUGCCGGa -3' miRNA: 3'- cuUCauCAGC-GCCU-------CGGUGU------------ACGGCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 36854 | 0.66 | 0.740149 |
Target: 5'- gGAuGUGGUCGCGGAuagGCgGCGaauccgGCuCGGg -3' miRNA: 3'- -CUuCAUCAGCGCCU---CGgUGUa-----CG-GCC- -5' |
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23909 | 5' | -55.3 | NC_005262.1 | + | 51564 | 0.66 | 0.740149 |
Target: 5'- --cGUGGUcgcgCGCGGAGCUugAgcgcGCCGc -3' miRNA: 3'- cuuCAUCA----GCGCCUCGGugUa---CGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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