miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2391 3' -48.8 NC_001416.1 + 44671 1.09 0.003843
Target:  5'- aAAUGCAAUCCCGAAACAGUUCGCAGGu -3'
miRNA:   3'- -UUACGUUAGGGCUUUGUCAAGCGUCC- -5'
2391 3' -48.8 NC_001416.1 + 16145 0.73 0.650783
Target:  5'- cGUGCAGguggaCUCGGAGCAGUUCgGCAGc -3'
miRNA:   3'- uUACGUUa----GGGCUUUGUCAAG-CGUCc -5'
2391 3' -48.8 NC_001416.1 + 46706 0.68 0.871042
Target:  5'- uGGUGUuauUCCCGAuGCuuuuugaAGUUCGCAGa -3'
miRNA:   3'- -UUACGuu-AGGGCUuUG-------UCAAGCGUCc -5'
2391 3' -48.8 NC_001416.1 + 10485 0.67 0.92335
Target:  5'- --cGUAAUgCUGAuGACAGUaucagaagggaUCGCAGGa -3'
miRNA:   3'- uuaCGUUAgGGCU-UUGUCA-----------AGCGUCC- -5'
2391 3' -48.8 NC_001416.1 + 5115 0.66 0.950823
Target:  5'- -cUGCAGUCCCGGAugGa--CGCAa- -3'
miRNA:   3'- uuACGUUAGGGCUUugUcaaGCGUcc -5'
2391 3' -48.8 NC_001416.1 + 14549 0.66 0.945948
Target:  5'- --aGC-AUCCCGGAACAGUgUGUAa- -3'
miRNA:   3'- uuaCGuUAGGGCUUUGUCAaGCGUcc -5'
2391 3' -48.8 NC_001416.1 + 22139 0.68 0.880132
Target:  5'- cGGUGCAAUaUCGguACuGUUUGCAGGc -3'
miRNA:   3'- -UUACGUUAgGGCuuUGuCAAGCGUCC- -5'
2391 3' -48.8 NC_001416.1 + 35476 0.69 0.836151
Target:  5'- aAGUGCGAUUCCGGAuuaGCugccaauGUgccaaUCGCGGGg -3'
miRNA:   3'- -UUACGUUAGGGCUU---UGu------CA-----AGCGUCC- -5'
2391 3' -48.8 NC_001416.1 + 44793 0.73 0.60391
Target:  5'- uGUGCAgauauaaaaaAUCCCGAAACcGUUaUGCAGGc -3'
miRNA:   3'- uUACGU----------UAGGGCUUUGuCAA-GCGUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.