miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23911 5' -62.8 NC_005262.1 + 16349 0.66 0.316293
Target:  5'- gGCUCGGcGCGCUgaucggcGCCGCCGCGu--- -3'
miRNA:   3'- aUGAGCC-CGCGGa------CGGUGGUGCccuu -5'
23911 5' -62.8 NC_005262.1 + 58178 0.67 0.308888
Target:  5'- aACUCGGGCGaggucgcgaacaUCgacGCCGCCGCGGu-- -3'
miRNA:   3'- aUGAGCCCGC------------GGa--CGGUGGUGCCcuu -5'
23911 5' -62.8 NC_005262.1 + 61719 0.67 0.301617
Target:  5'- cGCUCGGcGCGCuCUGCUuacuucGCCGCGucguGGAu -3'
miRNA:   3'- aUGAGCC-CGCG-GACGG------UGGUGC----CCUu -5'
23911 5' -62.8 NC_005262.1 + 33059 0.67 0.294478
Target:  5'- gUACUaagCGGGC-CCUcgacccucucGCCACgGCGGGAGg -3'
miRNA:   3'- -AUGA---GCCCGcGGA----------CGGUGgUGCCCUU- -5'
23911 5' -62.8 NC_005262.1 + 15884 0.67 0.288167
Target:  5'- cGCUC-GGCGUCUGCaaaaacaaauucuuaGCCACGGGc- -3'
miRNA:   3'- aUGAGcCCGCGGACGg--------------UGGUGCCCuu -5'
23911 5' -62.8 NC_005262.1 + 46088 0.67 0.267242
Target:  5'- gGCUCGGGCucguucggGCCaGCgACCACGGc-- -3'
miRNA:   3'- aUGAGCCCG--------CGGaCGgUGGUGCCcuu -5'
23911 5' -62.8 NC_005262.1 + 58722 0.67 0.267242
Target:  5'- aGC-CGGucgcacGCGCC-GCCGCCGCGGGc- -3'
miRNA:   3'- aUGaGCC------CGCGGaCGGUGGUGCCCuu -5'
23911 5' -62.8 NC_005262.1 + 4589 0.69 0.224524
Target:  5'- cUGCUCGGGCGUgaGCgC-CCGCaGGAAc -3'
miRNA:   3'- -AUGAGCCCGCGgaCG-GuGGUGcCCUU- -5'
23911 5' -62.8 NC_005262.1 + 10982 0.69 0.218918
Target:  5'- cGCUCGccgaGCGCCUGCCACUGCGa--- -3'
miRNA:   3'- aUGAGCc---CGCGGACGGUGGUGCccuu -5'
23911 5' -62.8 NC_005262.1 + 38001 1.04 0.000431
Target:  5'- gUACUCGGGCGCCUGCCACCACGGGAAg -3'
miRNA:   3'- -AUGAGCCCGCGGACGGUGGUGCCCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.