Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23911 | 5' | -62.8 | NC_005262.1 | + | 16349 | 0.66 | 0.316293 |
Target: 5'- gGCUCGGcGCGCUgaucggcGCCGCCGCGu--- -3' miRNA: 3'- aUGAGCC-CGCGGa------CGGUGGUGCccuu -5' |
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23911 | 5' | -62.8 | NC_005262.1 | + | 58178 | 0.67 | 0.308888 |
Target: 5'- aACUCGGGCGaggucgcgaacaUCgacGCCGCCGCGGu-- -3' miRNA: 3'- aUGAGCCCGC------------GGa--CGGUGGUGCCcuu -5' |
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23911 | 5' | -62.8 | NC_005262.1 | + | 61719 | 0.67 | 0.301617 |
Target: 5'- cGCUCGGcGCGCuCUGCUuacuucGCCGCGucguGGAu -3' miRNA: 3'- aUGAGCC-CGCG-GACGG------UGGUGC----CCUu -5' |
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23911 | 5' | -62.8 | NC_005262.1 | + | 33059 | 0.67 | 0.294478 |
Target: 5'- gUACUaagCGGGC-CCUcgacccucucGCCACgGCGGGAGg -3' miRNA: 3'- -AUGA---GCCCGcGGA----------CGGUGgUGCCCUU- -5' |
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23911 | 5' | -62.8 | NC_005262.1 | + | 15884 | 0.67 | 0.288167 |
Target: 5'- cGCUC-GGCGUCUGCaaaaacaaauucuuaGCCACGGGc- -3' miRNA: 3'- aUGAGcCCGCGGACGg--------------UGGUGCCCuu -5' |
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23911 | 5' | -62.8 | NC_005262.1 | + | 46088 | 0.67 | 0.267242 |
Target: 5'- gGCUCGGGCucguucggGCCaGCgACCACGGc-- -3' miRNA: 3'- aUGAGCCCG--------CGGaCGgUGGUGCCcuu -5' |
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23911 | 5' | -62.8 | NC_005262.1 | + | 58722 | 0.67 | 0.267242 |
Target: 5'- aGC-CGGucgcacGCGCC-GCCGCCGCGGGc- -3' miRNA: 3'- aUGaGCC------CGCGGaCGGUGGUGCCCuu -5' |
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23911 | 5' | -62.8 | NC_005262.1 | + | 4589 | 0.69 | 0.224524 |
Target: 5'- cUGCUCGGGCGUgaGCgC-CCGCaGGAAc -3' miRNA: 3'- -AUGAGCCCGCGgaCG-GuGGUGcCCUU- -5' |
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23911 | 5' | -62.8 | NC_005262.1 | + | 10982 | 0.69 | 0.218918 |
Target: 5'- cGCUCGccgaGCGCCUGCCACUGCGa--- -3' miRNA: 3'- aUGAGCc---CGCGGACGGUGGUGCccuu -5' |
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23911 | 5' | -62.8 | NC_005262.1 | + | 38001 | 1.04 | 0.000431 |
Target: 5'- gUACUCGGGCGCCUGCCACCACGGGAAg -3' miRNA: 3'- -AUGAGCCCGCGGACGGUGGUGCCCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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