miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23912 3' -54 NC_005262.1 + 50887 0.67 0.735626
Target:  5'- cGCACGGCGCGccgucaaucaccUGAacgcGCAGGGCAucGaGCAc -3'
miRNA:   3'- -CGUGCCGUGCa-----------ACU----UGUCCUGU--C-CGU- -5'
23912 3' -54 NC_005262.1 + 47244 0.67 0.727158
Target:  5'- cCGCGGC-CG-UGAACGGGAgcGGCu -3'
miRNA:   3'- cGUGCCGuGCaACUUGUCCUguCCGu -5'
23912 3' -54 NC_005262.1 + 51766 0.67 0.726095
Target:  5'- uGCGCaGCACGggaUGAccgaugcGCAGGucCAGGCu -3'
miRNA:   3'- -CGUGcCGUGCa--ACU-------UGUCCu-GUCCGu -5'
23912 3' -54 NC_005262.1 + 24223 0.68 0.716488
Target:  5'- uGCGcCGGCACGccgauuggUUGAGuaagauCGGGAgGGGCGa -3'
miRNA:   3'- -CGU-GCCGUGC--------AACUU------GUCCUgUCCGU- -5'
23912 3' -54 NC_005262.1 + 27738 0.68 0.716488
Target:  5'- aGUGCGGCAgGUUG-GCAGuacCGGGCGu -3'
miRNA:   3'- -CGUGCCGUgCAACuUGUCcu-GUCCGU- -5'
23912 3' -54 NC_005262.1 + 43848 0.68 0.694907
Target:  5'- cGCGCGGCgguGCGcc-GGCAGGACcucGGCGc -3'
miRNA:   3'- -CGUGCCG---UGCaacUUGUCCUGu--CCGU- -5'
23912 3' -54 NC_005262.1 + 20593 0.68 0.673083
Target:  5'- cGCGCGGCGCGcc--GCAGGGCuguuGCGu -3'
miRNA:   3'- -CGUGCCGUGCaacuUGUCCUGuc--CGU- -5'
23912 3' -54 NC_005262.1 + 34127 0.69 0.662108
Target:  5'- gGUugGGCGgGcUGcGCGGGcGCGGGCGg -3'
miRNA:   3'- -CGugCCGUgCaACuUGUCC-UGUCCGU- -5'
23912 3' -54 NC_005262.1 + 17109 0.69 0.662108
Target:  5'- cGCGCGGCGC--UGAcuGCAucGGCGGGCGu -3'
miRNA:   3'- -CGUGCCGUGcaACU--UGUc-CUGUCCGU- -5'
23912 3' -54 NC_005262.1 + 62201 0.69 0.640082
Target:  5'- -aACGGCACGUUGAugccgaucuuucucuCGGGAUugcccucguuccaGGGCGu -3'
miRNA:   3'- cgUGCCGUGCAACUu--------------GUCCUG-------------UCCGU- -5'
23912 3' -54 NC_005262.1 + 13987 0.69 0.618028
Target:  5'- cGCGCGGC-CGaucGGGCcGGACGGuGCAg -3'
miRNA:   3'- -CGUGCCGuGCaa-CUUGuCCUGUC-CGU- -5'
23912 3' -54 NC_005262.1 + 28918 0.7 0.607015
Target:  5'- cGCGauccaGGCACG----GCAGGAaCAGGCAg -3'
miRNA:   3'- -CGUg----CCGUGCaacuUGUCCU-GUCCGU- -5'
23912 3' -54 NC_005262.1 + 13797 0.7 0.596023
Target:  5'- gGCGcCGGCGCGgcuucaucGGCGGGAgCGGGCGc -3'
miRNA:   3'- -CGU-GCCGUGCaac-----UUGUCCU-GUCCGU- -5'
23912 3' -54 NC_005262.1 + 40666 0.7 0.585062
Target:  5'- aGCGCGGUGCGgcGAACGGGugGaaCAg -3'
miRNA:   3'- -CGUGCCGUGCaaCUUGUCCugUccGU- -5'
23912 3' -54 NC_005262.1 + 59957 0.7 0.563267
Target:  5'- -aGCGGCACGUcacGcGCGGGGCGcucGGCAc -3'
miRNA:   3'- cgUGCCGUGCAa--CuUGUCCUGU---CCGU- -5'
23912 3' -54 NC_005262.1 + 19102 0.71 0.520404
Target:  5'- cGCGCGGCgaugccACGUUcGGAuCGGGcGCGGGCGc -3'
miRNA:   3'- -CGUGCCG------UGCAA-CUU-GUCC-UGUCCGU- -5'
23912 3' -54 NC_005262.1 + 36740 0.71 0.520404
Target:  5'- cGCACGaacgcguaGCGCGUgaggucGAugGCGGGGCGGGCu -3'
miRNA:   3'- -CGUGC--------CGUGCAa-----CU--UGUCCUGUCCGu -5'
23912 3' -54 NC_005262.1 + 12932 0.71 0.49945
Target:  5'- uGCGCGGCGCGcUGA--AGGGCGugcgcgacGGCAu -3'
miRNA:   3'- -CGUGCCGUGCaACUugUCCUGU--------CCGU- -5'
23912 3' -54 NC_005262.1 + 14024 0.72 0.489113
Target:  5'- gGCGCGGCAgCGgccgGAGCcucGGGcGCGGGCGc -3'
miRNA:   3'- -CGUGCCGU-GCaa--CUUG---UCC-UGUCCGU- -5'
23912 3' -54 NC_005262.1 + 20962 0.72 0.4449
Target:  5'- uGCACGGCAgGUUGAGCucgagcuuuuccuGaGACAuGGCGu -3'
miRNA:   3'- -CGUGCCGUgCAACUUGu------------C-CUGU-CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.