miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23912 5' -62.2 NC_005262.1 + 18395 0.66 0.372907
Target:  5'- -uUGCGCggcugCCUGC-UGCuGCGCCGCc- -3'
miRNA:   3'- cuACGCGg----GGACGaACG-CGCGGCGcc -5'
23912 5' -62.2 NC_005262.1 + 16874 0.67 0.364652
Target:  5'- --gGCGCCCg-GCc-GCGCGCCG-GGc -3'
miRNA:   3'- cuaCGCGGGgaCGaaCGCGCGGCgCC- -5'
23912 5' -62.2 NC_005262.1 + 63587 0.67 0.364652
Target:  5'- --gGCauGCUCgUGC--GCGCGCUGCGGa -3'
miRNA:   3'- cuaCG--CGGGgACGaaCGCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 50650 0.67 0.364652
Target:  5'- -uUGUGCCgC-GCagcGCGCGCgGCGGa -3'
miRNA:   3'- cuACGCGGgGaCGaa-CGCGCGgCGCC- -5'
23912 5' -62.2 NC_005262.1 + 33804 0.67 0.364652
Target:  5'- --cGCuGCCCUUGUUgGCGuCGuCCGUGGu -3'
miRNA:   3'- cuaCG-CGGGGACGAaCGC-GC-GGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 51673 0.67 0.364652
Target:  5'- --aGCGCggcgaUCUGCUcGCGCGCacgGCGGc -3'
miRNA:   3'- cuaCGCGg----GGACGAaCGCGCGg--CGCC- -5'
23912 5' -62.2 NC_005262.1 + 24343 0.67 0.364652
Target:  5'- cAUGCGgCUCUGCgucgGCGCGCCu--- -3'
miRNA:   3'- cUACGCgGGGACGaa--CGCGCGGcgcc -5'
23912 5' -62.2 NC_005262.1 + 46005 0.67 0.363833
Target:  5'- --cGCGUUCCUGCacGCGCaaggcgucgcgcuGCCGCGc -3'
miRNA:   3'- cuaCGCGGGGACGaaCGCG-------------CGGCGCc -5'
23912 5' -62.2 NC_005262.1 + 11148 0.67 0.356524
Target:  5'- cGAUGCGCacguucugCUCUGCggucGCGCGCCaCGa -3'
miRNA:   3'- -CUACGCG--------GGGACGaa--CGCGCGGcGCc -5'
23912 5' -62.2 NC_005262.1 + 17087 0.67 0.356524
Target:  5'- -uUGCGCCg--GCUUGUccacuGCGCgCGCGGc -3'
miRNA:   3'- cuACGCGGggaCGAACG-----CGCG-GCGCC- -5'
23912 5' -62.2 NC_005262.1 + 41552 0.67 0.356524
Target:  5'- uGAUGCGCaggCCggccgGCgUGgGCGgCGCGGc -3'
miRNA:   3'- -CUACGCGg--GGa----CGaACgCGCgGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 16793 0.67 0.340654
Target:  5'- cGAUGuCGCCCauCUGCgucGCGCGCCa--- -3'
miRNA:   3'- -CUAC-GCGGG--GACGaa-CGCGCGGcgcc -5'
23912 5' -62.2 NC_005262.1 + 34351 0.67 0.340654
Target:  5'- -cUGCGCCUCUGC---CGCaGCCuuGCGGg -3'
miRNA:   3'- cuACGCGGGGACGaacGCG-CGG--CGCC- -5'
23912 5' -62.2 NC_005262.1 + 62720 0.67 0.332913
Target:  5'- --cGCGCacgcaCCCUGaucgGCGCGCUgGCGGu -3'
miRNA:   3'- cuaCGCG-----GGGACgaa-CGCGCGG-CGCC- -5'
23912 5' -62.2 NC_005262.1 + 53218 0.67 0.332913
Target:  5'- --cGCGCCgCgCUGCUccGCGguaCGCUGCGGc -3'
miRNA:   3'- cuaCGCGG-G-GACGAa-CGC---GCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 6064 0.67 0.332913
Target:  5'- --aGCGCCUUgacgauacucaUGCggcGCGCGUCGUGGc -3'
miRNA:   3'- cuaCGCGGGG-----------ACGaa-CGCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 4411 0.67 0.332913
Target:  5'- --cGCGCgCCUGC-UGCGCGagCGCcuGGa -3'
miRNA:   3'- cuaCGCGgGGACGaACGCGCg-GCG--CC- -5'
23912 5' -62.2 NC_005262.1 + 5090 0.67 0.330616
Target:  5'- --aGCGCCUCggGCaugccgccagcuugUUGCGCGCucgcaaCGCGGg -3'
miRNA:   3'- cuaCGCGGGGa-CG--------------AACGCGCG------GCGCC- -5'
23912 5' -62.2 NC_005262.1 + 60981 0.67 0.325302
Target:  5'- cGAUGCGUUCCUGUcgGcCGUGCCGa-- -3'
miRNA:   3'- -CUACGCGGGGACGaaC-GCGCGGCgcc -5'
23912 5' -62.2 NC_005262.1 + 13687 0.67 0.325302
Target:  5'- --aGCGCUcggccggcuUCUGUUcGCGCGgCGCGGg -3'
miRNA:   3'- cuaCGCGG---------GGACGAaCGCGCgGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.