miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23915 3' -60 NC_005262.1 + 55059 0.66 0.495976
Target:  5'- cGCGACGGGCauggaggaGCGCCGGCUgGgcCUCu- -3'
miRNA:   3'- cUGUUGCCUG--------CGCGGCCGGgU--GAGcu -5'
23915 3' -60 NC_005262.1 + 59046 0.66 0.495976
Target:  5'- aGugAuCcGugGCGCCGGCaggaGCUCGAg -3'
miRNA:   3'- -CugUuGcCugCGCGGCCGgg--UGAGCU- -5'
23915 3' -60 NC_005262.1 + 29901 0.66 0.495976
Target:  5'- -cCGAuCGGGC-CGCCGGCCgACgcaCGAu -3'
miRNA:   3'- cuGUU-GCCUGcGCGGCCGGgUGa--GCU- -5'
23915 3' -60 NC_005262.1 + 42191 0.66 0.494989
Target:  5'- gGGCGACGG-CGCGCCgaagaugaucgucGGCggcacgacguacCCGCUCGc -3'
miRNA:   3'- -CUGUUGCCuGCGCGG-------------CCG------------GGUGAGCu -5'
23915 3' -60 NC_005262.1 + 24949 0.66 0.493019
Target:  5'- uGCcGCGcGGCGCGCCcagcuucaggaacaGGCCgGCUUGGu -3'
miRNA:   3'- cUGuUGC-CUGCGCGG--------------CCGGgUGAGCU- -5'
23915 3' -60 NC_005262.1 + 16980 0.67 0.486151
Target:  5'- -uCGGCGaGCGCGCgGGCCUGCacgUCGGu -3'
miRNA:   3'- cuGUUGCcUGCGCGgCCGGGUG---AGCU- -5'
23915 3' -60 NC_005262.1 + 15119 0.67 0.486151
Target:  5'- -cCGGCuGGaACGCGCUGGCCgGCagcuugUCGAg -3'
miRNA:   3'- cuGUUG-CC-UGCGCGGCCGGgUG------AGCU- -5'
23915 3' -60 NC_005262.1 + 13644 0.67 0.486151
Target:  5'- cGCAgGCGGuCGCGCagcucaGGCUCGCUCc- -3'
miRNA:   3'- cUGU-UGCCuGCGCGg-----CCGGGUGAGcu -5'
23915 3' -60 NC_005262.1 + 5075 0.67 0.486151
Target:  5'- cGGCGGCGG-CGCGUgCGaCCgGCUCGGc -3'
miRNA:   3'- -CUGUUGCCuGCGCG-GCcGGgUGAGCU- -5'
23915 3' -60 NC_005262.1 + 28591 0.67 0.47642
Target:  5'- cGCAuccuuGCGGACGUagGCUGGCCaCGCggCGGu -3'
miRNA:   3'- cUGU-----UGCCUGCG--CGGCCGG-GUGa-GCU- -5'
23915 3' -60 NC_005262.1 + 15489 0.67 0.47642
Target:  5'- uACAcCGaGCGCGgCGGCUCGCUCa- -3'
miRNA:   3'- cUGUuGCcUGCGCgGCCGGGUGAGcu -5'
23915 3' -60 NC_005262.1 + 31890 0.67 0.47642
Target:  5'- cGACuucACGGGCuaCGCgGGCaacCCGCUCGAc -3'
miRNA:   3'- -CUGu--UGCCUGc-GCGgCCG---GGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 1046 0.67 0.466787
Target:  5'- cGACAAUaGGCGCGaUCGGCCCggaGC-CGAc -3'
miRNA:   3'- -CUGUUGcCUGCGC-GGCCGGG---UGaGCU- -5'
23915 3' -60 NC_005262.1 + 46807 0.67 0.466787
Target:  5'- cGAUGACcGACGUGCaGGCCCGCgCGc -3'
miRNA:   3'- -CUGUUGcCUGCGCGgCCGGGUGaGCu -5'
23915 3' -60 NC_005262.1 + 52970 0.67 0.466787
Target:  5'- cGCGGCGGACGCGCauGCgCUGgUCGu -3'
miRNA:   3'- cUGUUGCCUGCGCGgcCG-GGUgAGCu -5'
23915 3' -60 NC_005262.1 + 34135 0.67 0.457256
Target:  5'- gGGCugcGCGGGCGCgGgCGGCaugCCGCUCGc -3'
miRNA:   3'- -CUGu--UGCCUGCG-CgGCCG---GGUGAGCu -5'
23915 3' -60 NC_005262.1 + 39234 0.67 0.451587
Target:  5'- cGGCGACGGACGCgaucagcaggaucacGCCGGCgaUCGCgaaGGu -3'
miRNA:   3'- -CUGUUGCCUGCG---------------CGGCCG--GGUGag-CU- -5'
23915 3' -60 NC_005262.1 + 9122 0.67 0.447829
Target:  5'- cGCAGCGGcuaugaggACcgGCGCCGGgCCGgUCGGa -3'
miRNA:   3'- cUGUUGCC--------UG--CGCGGCCgGGUgAGCU- -5'
23915 3' -60 NC_005262.1 + 26676 0.67 0.445023
Target:  5'- aGCAAUGGAucaacgugcagugcCGUgGCCGGCCCGaUCGGu -3'
miRNA:   3'- cUGUUGCCU--------------GCG-CGGCCGGGUgAGCU- -5'
23915 3' -60 NC_005262.1 + 479 0.67 0.438512
Target:  5'- cGGCGACGcGGCGCGCgUGuuCCACgUCGAc -3'
miRNA:   3'- -CUGUUGC-CUGCGCG-GCcgGGUG-AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.