miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23916 3' -52 NC_005262.1 + 45413 0.66 0.881191
Target:  5'- --cGGUGCGGGUC-GUGcAACGGc-- -3'
miRNA:   3'- cuaCCGCGCCUAGuCACaUUGCCuug -5'
23916 3' -52 NC_005262.1 + 5159 0.66 0.87335
Target:  5'- --cGGCGCGcuGAUCGGUG--ACGGccGGCg -3'
miRNA:   3'- cuaCCGCGC--CUAGUCACauUGCC--UUG- -5'
23916 3' -52 NC_005262.1 + 22298 0.67 0.830412
Target:  5'- uGUGGCcCGGAUCGGUG--ACGGu-- -3'
miRNA:   3'- cUACCGcGCCUAGUCACauUGCCuug -5'
23916 3' -52 NC_005262.1 + 34005 0.68 0.821139
Target:  5'- --gGGCGCGGA-CGGcGUGACGccGGGCc -3'
miRNA:   3'- cuaCCGCGCCUaGUCaCAUUGC--CUUG- -5'
23916 3' -52 NC_005262.1 + 22340 0.68 0.81166
Target:  5'- --gGGCuGCGG-UCAGcGUAACGGuAGCc -3'
miRNA:   3'- cuaCCG-CGCCuAGUCaCAUUGCC-UUG- -5'
23916 3' -52 NC_005262.1 + 4598 0.68 0.792126
Target:  5'- cGUGaGCGCccgcaGGAaCGGgcgGUGACGGAACu -3'
miRNA:   3'- cUAC-CGCG-----CCUaGUCa--CAUUGCCUUG- -5'
23916 3' -52 NC_005262.1 + 9229 0.69 0.771901
Target:  5'- aGUGGCGuCGGccgcCAGUcGUGAgGGGACg -3'
miRNA:   3'- cUACCGC-GCCua--GUCA-CAUUgCCUUG- -5'
23916 3' -52 NC_005262.1 + 41392 0.69 0.761558
Target:  5'- --cGGCGCucGAUCAGUGcgaacGCGGGAUg -3'
miRNA:   3'- cuaCCGCGc-CUAGUCACau---UGCCUUG- -5'
23916 3' -52 NC_005262.1 + 46887 0.69 0.729753
Target:  5'- uGUGGUGCGGugCGGUGcgGGCGGuGCg -3'
miRNA:   3'- cUACCGCGCCuaGUCACa-UUGCCuUG- -5'
23916 3' -52 NC_005262.1 + 22366 0.69 0.729753
Target:  5'- cGUGGUGCGGAg-GGUGUccggcGCGGAucGCg -3'
miRNA:   3'- cUACCGCGCCUagUCACAu----UGCCU--UG- -5'
23916 3' -52 NC_005262.1 + 36578 1.11 0.001814
Target:  5'- aGAUGGCGCGGAUCAGUGUAACGGAACg -3'
miRNA:   3'- -CUACCGCGCCUAGUCACAUUGCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.