miRNA display CGI


Results 1 - 20 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23916 5' -57.1 NC_005262.1 + 59386 0.66 0.623905
Target:  5'- aGGcGCuCGCGCAGCAgGcGCGCgACAUc -3'
miRNA:   3'- aUCaCG-GUGUGUCGUgC-CGUGgUGUG- -5'
23916 5' -57.1 NC_005262.1 + 15946 0.66 0.623905
Target:  5'- aAGUGCUGCACAcGCuCGGCuuCCGguCg -3'
miRNA:   3'- aUCACGGUGUGU-CGuGCCGu-GGUguG- -5'
23916 5' -57.1 NC_005262.1 + 34579 0.66 0.623905
Target:  5'- -cGUGUgCGCGCcGUGCGGCGCCGugaucCACg -3'
miRNA:   3'- auCACG-GUGUGuCGUGCCGUGGU-----GUG- -5'
23916 5' -57.1 NC_005262.1 + 14539 0.66 0.620604
Target:  5'- cAGUGCCguGCAUgcgcuggaucggcaGGCgucucgccGCGGCGCuCACGCg -3'
miRNA:   3'- aUCACGG--UGUG--------------UCG--------UGCCGUG-GUGUG- -5'
23916 5' -57.1 NC_005262.1 + 39021 0.66 0.617305
Target:  5'- aAGUGCuCGCcCGGCucgccGCGGUgcugaauccacuucgGCCGCACg -3'
miRNA:   3'- aUCACG-GUGuGUCG-----UGCCG---------------UGGUGUG- -5'
23916 5' -57.1 NC_005262.1 + 2554 0.66 0.612907
Target:  5'- cAG-GCCGcCGguGUAgGuGCGCCACACg -3'
miRNA:   3'- aUCaCGGU-GUguCGUgC-CGUGGUGUG- -5'
23916 5' -57.1 NC_005262.1 + 12627 0.66 0.612907
Target:  5'- ---cGCCGCAUuGCuCGGCACCgugaagaagaaGCGCg -3'
miRNA:   3'- aucaCGGUGUGuCGuGCCGUGG-----------UGUG- -5'
23916 5' -57.1 NC_005262.1 + 33203 0.66 0.612907
Target:  5'- ---cGCCgACGCAGgACGacgaGCGCCACAUu -3'
miRNA:   3'- aucaCGG-UGUGUCgUGC----CGUGGUGUG- -5'
23916 5' -57.1 NC_005262.1 + 4553 0.66 0.612907
Target:  5'- -cGUGCgCGCGCGGCGCaucucGCGCCAg-- -3'
miRNA:   3'- auCACG-GUGUGUCGUGc----CGUGGUgug -5'
23916 5' -57.1 NC_005262.1 + 2940 0.66 0.612907
Target:  5'- ---cGCCGCGCAuuGCcuCGGCcaucGCCACGCc -3'
miRNA:   3'- aucaCGGUGUGU--CGu-GCCG----UGGUGUG- -5'
23916 5' -57.1 NC_005262.1 + 10322 0.66 0.609611
Target:  5'- -cGUGCCGagccacuuCACGccguuguccucgacGC-CGGCGCCGCGCu -3'
miRNA:   3'- auCACGGU--------GUGU--------------CGuGCCGUGGUGUG- -5'
23916 5' -57.1 NC_005262.1 + 43653 0.66 0.601927
Target:  5'- gAGUGUgACAUGGCACguGGCgACCugaACGCa -3'
miRNA:   3'- aUCACGgUGUGUCGUG--CCG-UGG---UGUG- -5'
23916 5' -57.1 NC_005262.1 + 15166 0.66 0.601927
Target:  5'- cGGaUGUUGgACGGCACGcaGCGCUACGCg -3'
miRNA:   3'- aUC-ACGGUgUGUCGUGC--CGUGGUGUG- -5'
23916 5' -57.1 NC_005262.1 + 6247 0.66 0.601927
Target:  5'- ---cGCCGCGC-GCACGGUcuuuGCCGCc- -3'
miRNA:   3'- aucaCGGUGUGuCGUGCCG----UGGUGug -5'
23916 5' -57.1 NC_005262.1 + 31747 0.66 0.601927
Target:  5'- --aUGUCGCGCAagcGCACGGU-CCACAa -3'
miRNA:   3'- aucACGGUGUGU---CGUGCCGuGGUGUg -5'
23916 5' -57.1 NC_005262.1 + 30029 0.66 0.601927
Target:  5'- cGGUaGCgGCGauCGGCAUGGCGuuACGCa -3'
miRNA:   3'- aUCA-CGgUGU--GUCGUGCCGUggUGUG- -5'
23916 5' -57.1 NC_005262.1 + 38962 0.66 0.601927
Target:  5'- gGGUGau---CGGCACGGCGCCGgcCGCg -3'
miRNA:   3'- aUCACgguguGUCGUGCCGUGGU--GUG- -5'
23916 5' -57.1 NC_005262.1 + 43196 0.66 0.601927
Target:  5'- ---gGCUACgcaACAGCccuGCGGCgcGCCGCGCg -3'
miRNA:   3'- aucaCGGUG---UGUCG---UGCCG--UGGUGUG- -5'
23916 5' -57.1 NC_005262.1 + 34470 0.66 0.601927
Target:  5'- cGGaGCCuacggcguucgaGCACAuccGCGCGGCGgCGCGCg -3'
miRNA:   3'- aUCaCGG------------UGUGU---CGUGCCGUgGUGUG- -5'
23916 5' -57.1 NC_005262.1 + 46917 0.66 0.60083
Target:  5'- gUGGUGCgGCcCGGCGCgcggccgGGCGCCuGCAUc -3'
miRNA:   3'- -AUCACGgUGuGUCGUG-------CCGUGG-UGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.