miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23916 5' -57.1 NC_005262.1 + 195 0.68 0.464381
Target:  5'- -cGUGCCGgugacgaucCGCAGCGCGcGCACgaGCAUg -3'
miRNA:   3'- auCACGGU---------GUGUCGUGC-CGUGg-UGUG- -5'
23916 5' -57.1 NC_005262.1 + 1435 0.73 0.25851
Target:  5'- cGGUGCCACuuucgacgguguaggGCuGCAUGGUGCgGCACa -3'
miRNA:   3'- aUCACGGUG---------------UGuCGUGCCGUGgUGUG- -5'
23916 5' -57.1 NC_005262.1 + 2554 0.66 0.612907
Target:  5'- cAG-GCCGcCGguGUAgGuGCGCCACACg -3'
miRNA:   3'- aUCaCGGU-GUguCGUgC-CGUGGUGUG- -5'
23916 5' -57.1 NC_005262.1 + 2648 0.67 0.558349
Target:  5'- ---gGCC-CAUgccuGCGCGGCGCCGgGCg -3'
miRNA:   3'- aucaCGGuGUGu---CGUGCCGUGGUgUG- -5'
23916 5' -57.1 NC_005262.1 + 2777 0.66 0.587692
Target:  5'- gGGUGCCGCAuccuugucgucgauCAGCAUguccgucaGGCGCUcCACc -3'
miRNA:   3'- aUCACGGUGU--------------GUCGUG--------CCGUGGuGUG- -5'
23916 5' -57.1 NC_005262.1 + 2940 0.66 0.612907
Target:  5'- ---cGCCGCGCAuuGCcuCGGCcaucGCCACGCc -3'
miRNA:   3'- aucaCGGUGUGU--CGu-GCCG----UGGUGUG- -5'
23916 5' -57.1 NC_005262.1 + 3303 0.69 0.434894
Target:  5'- ---cGCCGCGCGGCcCGGCgucucgcccugAUCGCGCa -3'
miRNA:   3'- aucaCGGUGUGUCGuGCCG-----------UGGUGUG- -5'
23916 5' -57.1 NC_005262.1 + 3714 0.69 0.415848
Target:  5'- -cGUGCCcgucaGCGCGucgcGCGCGGCGuuGCGCa -3'
miRNA:   3'- auCACGG-----UGUGU----CGUGCCGUggUGUG- -5'
23916 5' -57.1 NC_005262.1 + 4553 0.66 0.612907
Target:  5'- -cGUGCgCGCGCGGCGCaucucGCGCCAg-- -3'
miRNA:   3'- auCACG-GUGUGUCGUGc----CGUGGUgug -5'
23916 5' -57.1 NC_005262.1 + 4901 0.69 0.415848
Target:  5'- ---gGCCugaucGCGCAGCGCGGCagcaGCCaACGCg -3'
miRNA:   3'- aucaCGG-----UGUGUCGUGCCG----UGG-UGUG- -5'
23916 5' -57.1 NC_005262.1 + 4974 0.69 0.406519
Target:  5'- aAGcGCCGCAgCAGCcagccuucACGGCGCCGauCACg -3'
miRNA:   3'- aUCaCGGUGU-GUCG--------UGCCGUGGU--GUG- -5'
23916 5' -57.1 NC_005262.1 + 6040 0.69 0.444604
Target:  5'- gUGGUGUgGUGCGGCACGaUACCGCACc -3'
miRNA:   3'- -AUCACGgUGUGUCGUGCcGUGGUGUG- -5'
23916 5' -57.1 NC_005262.1 + 6247 0.66 0.601927
Target:  5'- ---cGCCGCGC-GCACGGUcuuuGCCGCc- -3'
miRNA:   3'- aucaCGGUGUGuCGUGCCG----UGGUGug -5'
23916 5' -57.1 NC_005262.1 + 9298 0.73 0.255867
Target:  5'- gAGUGCgACgACAGCGUGGCGCCugGa -3'
miRNA:   3'- aUCACGgUG-UGUCGUGCCGUGGugUg -5'
23916 5' -57.1 NC_005262.1 + 9440 0.67 0.515708
Target:  5'- gGGUGCgaagccCGCAUuGUGCGGCACCauccuGCACg -3'
miRNA:   3'- aUCACG------GUGUGuCGUGCCGUGG-----UGUG- -5'
23916 5' -57.1 NC_005262.1 + 10322 0.66 0.609611
Target:  5'- -cGUGCCGagccacuuCACGccguuguccucgacGC-CGGCGCCGCGCu -3'
miRNA:   3'- auCACGGU--------GUGU--------------CGuGCCGUGGUGUG- -5'
23916 5' -57.1 NC_005262.1 + 11935 0.7 0.361902
Target:  5'- -cGUGCuCGCGuCGuuCGCGGCGCCGCGCu -3'
miRNA:   3'- auCACG-GUGU-GUc-GUGCCGUGGUGUG- -5'
23916 5' -57.1 NC_005262.1 + 12170 0.7 0.379335
Target:  5'- aAG-GCCGCGCugucuGCGCGGCAggagcaaaUCGCGCa -3'
miRNA:   3'- aUCaCGGUGUGu----CGUGCCGU--------GGUGUG- -5'
23916 5' -57.1 NC_005262.1 + 12331 0.69 0.444604
Target:  5'- -cGUGCCGCAgcGCGCGGCGgCAgCAUu -3'
miRNA:   3'- auCACGGUGUguCGUGCCGUgGU-GUG- -5'
23916 5' -57.1 NC_005262.1 + 12403 0.68 0.494879
Target:  5'- cGGUGCaCACGgucaGGCGCGGC-CUugGCc -3'
miRNA:   3'- aUCACG-GUGUg---UCGUGCCGuGGugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.