miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23917 3' -54.5 NC_005262.1 + 16735 0.66 0.851554
Target:  5'- -gGCGUCA-CGCCGUCG---UCGUa- -3'
miRNA:   3'- agCGCAGUaGCGGCAGCuacAGCAgc -5'
23917 3' -54.5 NC_005262.1 + 45861 0.66 0.843171
Target:  5'- aUCGCGaCcugcUCGCCGUUGgcGUCGgCGc -3'
miRNA:   3'- -AGCGCaGu---AGCGGCAGCuaCAGCaGC- -5'
23917 3' -54.5 NC_005262.1 + 17287 0.66 0.843171
Target:  5'- gCGCGggcaggggCGUCGCgGUCGGagugcucaUGUCGaCGg -3'
miRNA:   3'- aGCGCa-------GUAGCGgCAGCU--------ACAGCaGC- -5'
23917 3' -54.5 NC_005262.1 + 34756 0.66 0.843171
Target:  5'- gCGCGUCGUgccggCGCCGcUCGAgcUCGgCGg -3'
miRNA:   3'- aGCGCAGUA-----GCGGC-AGCUacAGCaGC- -5'
23917 3' -54.5 NC_005262.1 + 5888 0.66 0.834576
Target:  5'- -aGCG--AUCGaCGUCGAUGUCGggCGg -3'
miRNA:   3'- agCGCagUAGCgGCAGCUACAGCa-GC- -5'
23917 3' -54.5 NC_005262.1 + 30499 0.66 0.834576
Target:  5'- cUGCGUCAggCGCa--CGAgaugGUCGUCGc -3'
miRNA:   3'- aGCGCAGUa-GCGgcaGCUa---CAGCAGC- -5'
23917 3' -54.5 NC_005262.1 + 42192 0.66 0.834576
Target:  5'- -gGCGaCGgcgCGCCGaaGAUGaUCGUCGg -3'
miRNA:   3'- agCGCaGUa--GCGGCagCUAC-AGCAGC- -5'
23917 3' -54.5 NC_005262.1 + 9516 0.66 0.829321
Target:  5'- gCGCGcCA-CGUCGUCGAggucgagcacgcccuUGUUGUUGa -3'
miRNA:   3'- aGCGCaGUaGCGGCAGCU---------------ACAGCAGC- -5'
23917 3' -54.5 NC_005262.1 + 38349 0.66 0.825778
Target:  5'- cUCGCG-CAgCGCC-UCGGgcagGUUGUCGu -3'
miRNA:   3'- -AGCGCaGUaGCGGcAGCUa---CAGCAGC- -5'
23917 3' -54.5 NC_005262.1 + 30555 0.66 0.825778
Target:  5'- -aGCGcUCGacgUGCgCGUCGAUGUugaCGUCGg -3'
miRNA:   3'- agCGC-AGUa--GCG-GCAGCUACA---GCAGC- -5'
23917 3' -54.5 NC_005262.1 + 14433 0.66 0.825778
Target:  5'- aCGCGcgCGUCGCCGa----GUCGUCa -3'
miRNA:   3'- aGCGCa-GUAGCGGCagcuaCAGCAGc -5'
23917 3' -54.5 NC_005262.1 + 32159 0.66 0.816786
Target:  5'- aCGCGggCAUCGCCGUag--GUCGg-- -3'
miRNA:   3'- aGCGCa-GUAGCGGCAgcuaCAGCagc -5'
23917 3' -54.5 NC_005262.1 + 35783 0.67 0.798256
Target:  5'- cCGCGUagaucggcUCGCCGUCGuucUCGUCc -3'
miRNA:   3'- aGCGCAgu------AGCGGCAGCuacAGCAGc -5'
23917 3' -54.5 NC_005262.1 + 10689 0.67 0.788738
Target:  5'- uUCGUGaaGUCGCCGaCGAUGaUGUUGc -3'
miRNA:   3'- -AGCGCagUAGCGGCaGCUACaGCAGC- -5'
23917 3' -54.5 NC_005262.1 + 12954 0.67 0.788738
Target:  5'- gCGCGacggCAUCGCCGaccgcUCGgcGUCGaCGa -3'
miRNA:   3'- aGCGCa---GUAGCGGC-----AGCuaCAGCaGC- -5'
23917 3' -54.5 NC_005262.1 + 43643 0.67 0.788738
Target:  5'- gCGCGuUCGUCGgucucaCUGUCGAgcugGUgCGUCGg -3'
miRNA:   3'- aGCGC-AGUAGC------GGCAGCUa---CA-GCAGC- -5'
23917 3' -54.5 NC_005262.1 + 38596 0.67 0.779064
Target:  5'- -aGCccuUCGUCGUCGUCcugGUCGUCGc -3'
miRNA:   3'- agCGc--AGUAGCGGCAGcuaCAGCAGC- -5'
23917 3' -54.5 NC_005262.1 + 17466 0.67 0.769245
Target:  5'- aUCGCGUCuuUCGUCGcCGAUuccgCGUCc -3'
miRNA:   3'- -AGCGCAGu-AGCGGCaGCUAca--GCAGc -5'
23917 3' -54.5 NC_005262.1 + 30224 0.67 0.769245
Target:  5'- aUCGUGaUC-UCGCCGgccUCGAgcUCGUCGa -3'
miRNA:   3'- -AGCGC-AGuAGCGGC---AGCUacAGCAGC- -5'
23917 3' -54.5 NC_005262.1 + 964 0.67 0.759291
Target:  5'- cCGCGUCga-GCCGUgGccGaUCGUCGg -3'
miRNA:   3'- aGCGCAGuagCGGCAgCuaC-AGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.