miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23918 3' -55.8 NC_005262.1 + 39911 0.66 0.734842
Target:  5'- uACCGUGCgggUGAcacaauaCGUGUGCGcCGCGCg -3'
miRNA:   3'- -UGGUACGga-GCUa------GUACGCGU-GCGCG- -5'
23918 3' -55.8 NC_005262.1 + 58979 0.66 0.734842
Target:  5'- cGCCGgcgGCCUCacgccUCccGCGCcguCGCGCu -3'
miRNA:   3'- -UGGUa--CGGAGcu---AGuaCGCGu--GCGCG- -5'
23918 3' -55.8 NC_005262.1 + 23444 0.66 0.734842
Target:  5'- aGCCGU-CCgaCGAcug-GCGCAUGCGCg -3'
miRNA:   3'- -UGGUAcGGa-GCUaguaCGCGUGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 63303 0.66 0.734842
Target:  5'- gGCUcgGCgUCGA-CGUGgaaCACGCGCg -3'
miRNA:   3'- -UGGuaCGgAGCUaGUACgc-GUGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 11038 0.66 0.734842
Target:  5'- --gAUGCCguucgCGAUCu--CGCugGCGCc -3'
miRNA:   3'- uggUACGGa----GCUAGuacGCGugCGCG- -5'
23918 3' -55.8 NC_005262.1 + 50308 0.66 0.734842
Target:  5'- cGCCuucGCCagCGAguagCGcGCGaCGCGCGCg -3'
miRNA:   3'- -UGGua-CGGa-GCUa---GUaCGC-GUGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 4510 0.66 0.734842
Target:  5'- -gCAUGuCCUCguuGAUCc-GCGCgACGCGCu -3'
miRNA:   3'- ugGUAC-GGAG---CUAGuaCGCG-UGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 52519 0.66 0.734842
Target:  5'- gGCCGagaagucgGCCgaggaGAUC--GCGCugGCGCa -3'
miRNA:   3'- -UGGUa-------CGGag---CUAGuaCGCGugCGCG- -5'
23918 3' -55.8 NC_005262.1 + 36264 0.66 0.724361
Target:  5'- aGCUcgcCCUCG-UCgGUGCGCGCGgGCa -3'
miRNA:   3'- -UGGuacGGAGCuAG-UACGCGUGCgCG- -5'
23918 3' -55.8 NC_005262.1 + 26538 0.66 0.724361
Target:  5'- gGCUcgGCCgUUGuUCGUGCGguuCACGCGg -3'
miRNA:   3'- -UGGuaCGG-AGCuAGUACGC---GUGCGCg -5'
23918 3' -55.8 NC_005262.1 + 41378 0.66 0.724361
Target:  5'- uGCCGgcgagcaggcgGCgCUCGAUCAgUGCGaACGCGg -3'
miRNA:   3'- -UGGUa----------CG-GAGCUAGU-ACGCgUGCGCg -5'
23918 3' -55.8 NC_005262.1 + 55216 0.66 0.724361
Target:  5'- cGCCGUcGCUUCG-UC--GCGCAggcCGCGCu -3'
miRNA:   3'- -UGGUA-CGGAGCuAGuaCGCGU---GCGCG- -5'
23918 3' -55.8 NC_005262.1 + 3665 0.66 0.724361
Target:  5'- cCCAUGCCUUcgcCGcGaCGCugGCGCc -3'
miRNA:   3'- uGGUACGGAGcuaGUaC-GCGugCGCG- -5'
23918 3' -55.8 NC_005262.1 + 4674 0.66 0.721199
Target:  5'- aGCCAUGCCgcggccggaUCGGgccgcggcauccagUCGuUGCGCAaGUGCg -3'
miRNA:   3'- -UGGUACGG---------AGCU--------------AGU-ACGCGUgCGCG- -5'
23918 3' -55.8 NC_005262.1 + 11910 0.66 0.721199
Target:  5'- uGCCGUucggcggcgucGgCUCGGUCGUGCucgcgucguucgcgGCGcCGCGCu -3'
miRNA:   3'- -UGGUA-----------CgGAGCUAGUACG--------------CGU-GCGCG- -5'
23918 3' -55.8 NC_005262.1 + 48072 0.66 0.71379
Target:  5'- cACC-UGCCgcgaCGAgccgcCcgGCGCcgACGCGCg -3'
miRNA:   3'- -UGGuACGGa---GCUa----GuaCGCG--UGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 5273 0.66 0.71379
Target:  5'- aGCCGgaUGCCUCGuuGUCGUGguCGauCACGCGg -3'
miRNA:   3'- -UGGU--ACGGAGC--UAGUAC--GC--GUGCGCg -5'
23918 3' -55.8 NC_005262.1 + 10927 0.66 0.71379
Target:  5'- ----cGCCUCG-UCGUcgacaucgagccGCGCuACGCGCa -3'
miRNA:   3'- ugguaCGGAGCuAGUA------------CGCG-UGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 59383 0.66 0.71379
Target:  5'- uCCAgGCgCUCGcgCAgcagGCGCgcgacaucgcACGCGCa -3'
miRNA:   3'- uGGUaCG-GAGCuaGUa---CGCG----------UGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 61601 0.66 0.71379
Target:  5'- ----cGCuCUCGAccgagCAgaaGCGCGCGCGCc -3'
miRNA:   3'- ugguaCG-GAGCUa----GUa--CGCGUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.