miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23918 3' -55.8 NC_005262.1 + 20768 0.7 0.488987
Target:  5'- cCCAgcGCCaCGAgaucGCGCACGCGCg -3'
miRNA:   3'- uGGUa-CGGaGCUaguaCGCGUGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 42909 0.71 0.438519
Target:  5'- cACgAUGgCUCGucgucgcgucgucGUCcgGCGCGCGCGUc -3'
miRNA:   3'- -UGgUACgGAGC-------------UAGuaCGCGUGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 51300 0.71 0.43948
Target:  5'- uGCgCAUGCCgcUCGAcCAgauggGCGCAucCGCGCg -3'
miRNA:   3'- -UG-GUACGG--AGCUaGUa----CGCGU--GCGCG- -5'
23918 3' -55.8 NC_005262.1 + 15866 0.7 0.446241
Target:  5'- gGCCAUGuaCCUCGAcgcgauggcgcugaUCcgccGCGUGCGCGCg -3'
miRNA:   3'- -UGGUAC--GGAGCU--------------AGua--CGCGUGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 194 0.7 0.468855
Target:  5'- -gCGUGCCggugaCGAUCc-GCaGCGCGCGCa -3'
miRNA:   3'- ugGUACGGa----GCUAGuaCG-CGUGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 27043 0.7 0.468855
Target:  5'- cGCCccGCCaUCGAccUCAcGCGCuACGCGUu -3'
miRNA:   3'- -UGGuaCGG-AGCU--AGUaCGCG-UGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 40213 0.7 0.472848
Target:  5'- cUgGUGCgCUCGAcugguacuguugaagUCGUGCGCgugaccGCGCGCa -3'
miRNA:   3'- uGgUACG-GAGCU---------------AGUACGCG------UGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 10804 0.7 0.488987
Target:  5'- cGCgAgcUGCCgcgaCGAUCAcgaccaGCGCAUGCGCg -3'
miRNA:   3'- -UGgU--ACGGa---GCUAGUa-----CGCGUGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 55856 0.7 0.488987
Target:  5'- -aCGUGCC-CGAgcUgAUGCGCcGCGUGCg -3'
miRNA:   3'- ugGUACGGaGCU--AgUACGCG-UGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 11928 0.71 0.429923
Target:  5'- ----cGCCUCcAUCGUcgggaacaugGCGCACGCGCu -3'
miRNA:   3'- ugguaCGGAGcUAGUA----------CGCGUGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 46034 0.71 0.429923
Target:  5'- uGCCGcGCUacuaCGAagUCAUGCGCGCGuCGCc -3'
miRNA:   3'- -UGGUaCGGa---GCU--AGUACGCGUGC-GCG- -5'
23918 3' -55.8 NC_005262.1 + 34022 0.71 0.42049
Target:  5'- cGCCggGCCgc-AUCGUGCGC-CGCGUc -3'
miRNA:   3'- -UGGuaCGGagcUAGUACGCGuGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 2822 0.74 0.267037
Target:  5'- cACCugcGCCUCGAccUCGUuugcGCGCugGCGUg -3'
miRNA:   3'- -UGGua-CGGAGCU--AGUA----CGCGugCGCG- -5'
23918 3' -55.8 NC_005262.1 + 4540 0.73 0.3177
Target:  5'- -aCAgggGCUUC-AUCGUGCGCGCGCGg -3'
miRNA:   3'- ugGUa--CGGAGcUAGUACGCGUGCGCg -5'
23918 3' -55.8 NC_005262.1 + 41104 0.73 0.3177
Target:  5'- cGCCG-GCCacgUCGAgaUCGUGCGCgucacgGCGCGCu -3'
miRNA:   3'- -UGGUaCGG---AGCU--AGUACGCG------UGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 28799 0.73 0.323146
Target:  5'- gACCGUGaCCUCGcgCccGCGCAucucgagcucgcguCGCGCu -3'
miRNA:   3'- -UGGUAC-GGAGCuaGuaCGCGU--------------GCGCG- -5'
23918 3' -55.8 NC_005262.1 + 32902 0.73 0.333445
Target:  5'- gGCCAaGCCggCGG-CGU-CGCACGCGCg -3'
miRNA:   3'- -UGGUaCGGa-GCUaGUAcGCGUGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 27442 0.73 0.341529
Target:  5'- gACCAcgUGCCgaUCGAUCAagccugacgGCGCACGCa- -3'
miRNA:   3'- -UGGU--ACGG--AGCUAGUa--------CGCGUGCGcg -5'
23918 3' -55.8 NC_005262.1 + 10543 0.72 0.358119
Target:  5'- gGCUAUGCCgacgCGA-CcgGC-CGCGCGCa -3'
miRNA:   3'- -UGGUACGGa---GCUaGuaCGcGUGCGCG- -5'
23918 3' -55.8 NC_005262.1 + 49808 0.71 0.411183
Target:  5'- cACCGUccgGCC-CGAUCGgccGCGCgauggaGCGCGCg -3'
miRNA:   3'- -UGGUA---CGGaGCUAGUa--CGCG------UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.