miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23918 5' -62.5 NC_005262.1 + 25369 0.66 0.406854
Target:  5'- cGGCGugAucucgaccGCGCCGGCCuggaugGUGuCGCc- -3'
miRNA:   3'- uCCGCugU--------CGCGGCCGG------CACuGCGac -5'
23918 5' -62.5 NC_005262.1 + 30457 0.66 0.406854
Target:  5'- cGGCGGCacGGUGCCGcGCaGcGACGCa- -3'
miRNA:   3'- uCCGCUG--UCGCGGC-CGgCaCUGCGac -5'
23918 5' -62.5 NC_005262.1 + 4933 0.66 0.406854
Target:  5'- -cGCGgaGCuGCGCCGG-CGUGACGUc- -3'
miRNA:   3'- ucCGC--UGuCGCGGCCgGCACUGCGac -5'
23918 5' -62.5 NC_005262.1 + 24871 0.66 0.406854
Target:  5'- cGGCGAUgugcaucCGCCGGCgCGUGACagGCg- -3'
miRNA:   3'- uCCGCUGuc-----GCGGCCG-GCACUG--CGac -5'
23918 5' -62.5 NC_005262.1 + 58914 0.66 0.398137
Target:  5'- cAGGcCGGCGGC-CCGaCCGaUGGCGCg- -3'
miRNA:   3'- -UCC-GCUGUCGcGGCcGGC-ACUGCGac -5'
23918 5' -62.5 NC_005262.1 + 6461 0.66 0.398137
Target:  5'- cGGCGAgA-CGCCGGCaucGACGCg- -3'
miRNA:   3'- uCCGCUgUcGCGGCCGgcaCUGCGac -5'
23918 5' -62.5 NC_005262.1 + 35713 0.66 0.389542
Target:  5'- cGGCGuCGGCGggaCGGCC---ACGCUGa -3'
miRNA:   3'- uCCGCuGUCGCg--GCCGGcacUGCGAC- -5'
23918 5' -62.5 NC_005262.1 + 6505 0.66 0.389542
Target:  5'- cGGCGcucguucugcuGCA-CGCgGGCCGUGA-GCUGc -3'
miRNA:   3'- uCCGC-----------UGUcGCGgCCGGCACUgCGAC- -5'
23918 5' -62.5 NC_005262.1 + 49230 0.66 0.381069
Target:  5'- -cGCGugAGCGCCGcGgCGaGACGCc- -3'
miRNA:   3'- ucCGCugUCGCGGC-CgGCaCUGCGac -5'
23918 5' -62.5 NC_005262.1 + 57476 0.66 0.372719
Target:  5'- gAGGuCGAgGGCgagaaGCCGGCCGacgaGGCGCc- -3'
miRNA:   3'- -UCC-GCUgUCG-----CGGCCGGCa---CUGCGac -5'
23918 5' -62.5 NC_005262.1 + 60374 0.66 0.372719
Target:  5'- aAGGCGGCgaaGGuCGCCGGCCGcaaGAuCGUc- -3'
miRNA:   3'- -UCCGCUG---UC-GCGGCCGGCa--CU-GCGac -5'
23918 5' -62.5 NC_005262.1 + 1913 0.66 0.372719
Target:  5'- gGGGCGGagGGUGCgGGUugCGUGGCucGCUGg -3'
miRNA:   3'- -UCCGCUg-UCGCGgCCG--GCACUG--CGAC- -5'
23918 5' -62.5 NC_005262.1 + 58633 0.66 0.372719
Target:  5'- cAGGCucGGCAGuCGagCGGCCG-GGCGCg- -3'
miRNA:   3'- -UCCG--CUGUC-GCg-GCCGGCaCUGCGac -5'
23918 5' -62.5 NC_005262.1 + 24204 0.66 0.364495
Target:  5'- gAGGCGGCAgccgcgacgcuGCGCCGGCaCGccGAUugGUUGa -3'
miRNA:   3'- -UCCGCUGU-----------CGCGGCCG-GCa-CUG--CGAC- -5'
23918 5' -62.5 NC_005262.1 + 51013 0.66 0.364495
Target:  5'- -aGCGAcCGGCGaCCGcGCCGUGAuCGUg- -3'
miRNA:   3'- ucCGCU-GUCGC-GGC-CGGCACU-GCGac -5'
23918 5' -62.5 NC_005262.1 + 53243 0.67 0.356398
Target:  5'- -uGCGGCuGCGCgCGGCCG-GuCGCg- -3'
miRNA:   3'- ucCGCUGuCGCG-GCCGGCaCuGCGac -5'
23918 5' -62.5 NC_005262.1 + 43616 0.67 0.356398
Target:  5'- cAGGUGACGcuCGCCGGCaccGGCGCa- -3'
miRNA:   3'- -UCCGCUGUc-GCGGCCGgcaCUGCGac -5'
23918 5' -62.5 NC_005262.1 + 17387 0.67 0.348427
Target:  5'- cGGuCGACucGGCgGCCGacaauGCCGaGACGCUGg -3'
miRNA:   3'- uCC-GCUG--UCG-CGGC-----CGGCaCUGCGAC- -5'
23918 5' -62.5 NC_005262.1 + 5029 0.67 0.348427
Target:  5'- -aGCGGCAGUugcucGCCGGCCG--GCGcCUGa -3'
miRNA:   3'- ucCGCUGUCG-----CGGCCGGCacUGC-GAC- -5'
23918 5' -62.5 NC_005262.1 + 6121 0.67 0.347637
Target:  5'- cGGCGGCAcagucgccucgauGUGCgCGGCCGgGAuuuUGCUGa -3'
miRNA:   3'- uCCGCUGU-------------CGCG-GCCGGCaCU---GCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.