miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 3' -52.9 NC_005262.1 + 20780 0.66 0.841142
Target:  5'- ---aGAUCGCGCAc-GC--GCGCAUCu -3'
miRNA:   3'- aguaCUAGCGCGUcaCGuaCGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 3321 0.66 0.841142
Target:  5'- cUCGcccUGAUCGCGCAGcgucaUGUAgagcgacagGCGCAg- -3'
miRNA:   3'- -AGU---ACUAGCGCGUC-----ACGUa--------CGCGUag -5'
23919 3' -52.9 NC_005262.1 + 34749 0.66 0.832093
Target:  5'- aCAcGGUgCGCGUcGUGCcgGCGCcgCu -3'
miRNA:   3'- aGUaCUA-GCGCGuCACGuaCGCGuaG- -5'
23919 3' -52.9 NC_005262.1 + 2919 0.66 0.832093
Target:  5'- uUCAucUGGUCgGCGCAGUaGUGUGUG-AUCg -3'
miRNA:   3'- -AGU--ACUAG-CGCGUCA-CGUACGCgUAG- -5'
23919 3' -52.9 NC_005262.1 + 46883 0.66 0.822825
Target:  5'- uUCAUG-UgGUGCGGUGCG-GUGCGg- -3'
miRNA:   3'- -AGUACuAgCGCGUCACGUaCGCGUag -5'
23919 3' -52.9 NC_005262.1 + 25740 0.66 0.813347
Target:  5'- ---cGAUCGCGCAGgccgGCAaGcCGC-UCa -3'
miRNA:   3'- aguaCUAGCGCGUCa---CGUaC-GCGuAG- -5'
23919 3' -52.9 NC_005262.1 + 41549 0.66 0.813347
Target:  5'- gCGUGAU-GCGCAGgccgGCcgGCGUg-- -3'
miRNA:   3'- aGUACUAgCGCGUCa---CGuaCGCGuag -5'
23919 3' -52.9 NC_005262.1 + 5342 0.66 0.813347
Target:  5'- gUCGUGAcgcCGCGCAcgccUGCcgGgGCGUCc -3'
miRNA:   3'- -AGUACUa--GCGCGUc---ACGuaCgCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 52064 0.66 0.813347
Target:  5'- ---aGAUCGCGaAGccgaGCAUGCGCAa- -3'
miRNA:   3'- aguaCUAGCGCgUCa---CGUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 48777 0.67 0.80367
Target:  5'- aCAUGGcaGCGCAG-GaCGUGCGCGa- -3'
miRNA:   3'- aGUACUagCGCGUCaC-GUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 46523 0.67 0.80367
Target:  5'- uUCGUGucguagguGUCGCGCAGcucgaaCAgGCGCGUCu -3'
miRNA:   3'- -AGUAC--------UAGCGCGUCac----GUaCGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 63688 0.67 0.80367
Target:  5'- ---cGGUCGCcggcCGGUGaCAUGCGCAg- -3'
miRNA:   3'- aguaCUAGCGc---GUCAC-GUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 26284 0.67 0.80367
Target:  5'- cUCAgcuUCGCGaCGGUGCcguAUGCGC-UCu -3'
miRNA:   3'- -AGUacuAGCGC-GUCACG---UACGCGuAG- -5'
23919 3' -52.9 NC_005262.1 + 28297 0.67 0.783765
Target:  5'- cUAUG--CGCGCaAGcGCGUGCGCAUg -3'
miRNA:   3'- aGUACuaGCGCG-UCaCGUACGCGUAg -5'
23919 3' -52.9 NC_005262.1 + 1073 0.67 0.782752
Target:  5'- cCAg---CGCGCcgaucagGGUGCGUGCGCGa- -3'
miRNA:   3'- aGUacuaGCGCG-------UCACGUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 55124 0.67 0.77356
Target:  5'- aCAUGcUCGCGCAGUucGCAcGCGaauUCc -3'
miRNA:   3'- aGUACuAGCGCGUCA--CGUaCGCgu-AG- -5'
23919 3' -52.9 NC_005262.1 + 48965 0.67 0.77356
Target:  5'- gCAUGA-CGcCGCAGaUGCAggcgGCGC-UCa -3'
miRNA:   3'- aGUACUaGC-GCGUC-ACGUa---CGCGuAG- -5'
23919 3' -52.9 NC_005262.1 + 2207 0.67 0.77356
Target:  5'- ---cGAUCGCGCGGcaCAU-CGCGUCg -3'
miRNA:   3'- aguaCUAGCGCGUCacGUAcGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 17241 0.67 0.77356
Target:  5'- gUCGUGggCGuCGCGGgagcggcgGCcgGCGCcgCg -3'
miRNA:   3'- -AGUACuaGC-GCGUCa-------CGuaCGCGuaG- -5'
23919 3' -52.9 NC_005262.1 + 26880 0.67 0.77356
Target:  5'- gUCAcGAUCGaGUGG-GCcgGCGCGUCc -3'
miRNA:   3'- -AGUaCUAGCgCGUCaCGuaCGCGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.