miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 3' -52.9 NC_005262.1 + 35326 1.11 0.001196
Target:  5'- gUCAUGAUCGCGCAGUGCAUGCGCAUCa -3'
miRNA:   3'- -AGUACUAGCGCGUCACGUACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 39722 0.81 0.143235
Target:  5'- -uGUGAUCGCGCAGcagGCGcaGCGCAUCa -3'
miRNA:   3'- agUACUAGCGCGUCa--CGUa-CGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 59044 0.74 0.408568
Target:  5'- aCAUGAacCGCGUgaagcaGGUGCAggaGCGCAUCa -3'
miRNA:   3'- aGUACUa-GCGCG------UCACGUa--CGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 12856 0.73 0.457715
Target:  5'- gUCGUGccgagcuUCGCGCugccGUGCAcggugacgcucgUGCGCAUCa -3'
miRNA:   3'- -AGUACu------AGCGCGu---CACGU------------ACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 2970 0.73 0.437668
Target:  5'- ---cGAUCGCGUAG-GCcgGCGCAa- -3'
miRNA:   3'- aguaCUAGCGCGUCaCGuaCGCGUag -5'
23919 3' -52.9 NC_005262.1 + 21753 0.72 0.488676
Target:  5'- ---aGAUCGCGCAGcgGCA--CGCGUCa -3'
miRNA:   3'- aguaCUAGCGCGUCa-CGUacGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 13672 0.71 0.542302
Target:  5'- aCAUGAcgaagaucacgCGCGCGGUGCugGCGCGUg -3'
miRNA:   3'- aGUACUa----------GCGCGUCACGuaCGCGUAg -5'
23919 3' -52.9 NC_005262.1 + 10734 0.7 0.597735
Target:  5'- uUCGcGAUCGCGcCGGU-CA-GCGCGUCg -3'
miRNA:   3'- -AGUaCUAGCGC-GUCAcGUaCGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 14533 0.7 0.63143
Target:  5'- gCAUGGcaGUGCcGUGCAUGCGCuggAUCg -3'
miRNA:   3'- aGUACUagCGCGuCACGUACGCG---UAG- -5'
23919 3' -52.9 NC_005262.1 + 13005 0.7 0.635929
Target:  5'- aCGUGGguguaCGCGCAGgagcGCGccaagggcuacgcggUGCGCGUCg -3'
miRNA:   3'- aGUACUa----GCGCGUCa---CGU---------------ACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 4551 0.7 0.608949
Target:  5'- aUCGUGcgCGCGCGGcGCAUcucGCGCc-- -3'
miRNA:   3'- -AGUACuaGCGCGUCaCGUA---CGCGuag -5'
23919 3' -52.9 NC_005262.1 + 25002 0.69 0.653913
Target:  5'- --uUGcUCGCGCcGUGCA-GCGCAUg -3'
miRNA:   3'- aguACuAGCGCGuCACGUaCGCGUAg -5'
23919 3' -52.9 NC_005262.1 + 57998 0.69 0.676312
Target:  5'- cUCAUGAaCGCGU---GCAUGCGCGc- -3'
miRNA:   3'- -AGUACUaGCGCGucaCGUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 40463 0.69 0.665128
Target:  5'- cCGUGGUCGaGCGcGUGCucGUGCGCGg- -3'
miRNA:   3'- aGUACUAGCgCGU-CACG--UACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 43986 0.69 0.642676
Target:  5'- gCGUGAUCGCGCGG-GCGaugGuCGCuuaAUCg -3'
miRNA:   3'- aGUACUAGCGCGUCaCGUa--C-GCG---UAG- -5'
23919 3' -52.9 NC_005262.1 + 50758 0.69 0.687451
Target:  5'- ---aGAUCGUGCAGacggGCAaggUGCGguUCg -3'
miRNA:   3'- aguaCUAGCGCGUCa---CGU---ACGCguAG- -5'
23919 3' -52.9 NC_005262.1 + 52635 0.69 0.642676
Target:  5'- cUCGUGG-CGCGCGaccGCAgagcagaacgUGCGCAUCg -3'
miRNA:   3'- -AGUACUaGCGCGUca-CGU----------ACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 45667 0.69 0.687451
Target:  5'- aCA-GAUCgaGCGCauGGUGCcgcacuucGUGCGCAUCg -3'
miRNA:   3'- aGUaCUAG--CGCG--UCACG--------UACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 22356 0.68 0.698536
Target:  5'- cUAUGAUcCGCGUGGUGCGgaggguguccgGCGCGgaUCg -3'
miRNA:   3'- aGUACUA-GCGCGUCACGUa----------CGCGU--AG- -5'
23919 3' -52.9 NC_005262.1 + 24726 0.68 0.698536
Target:  5'- --cUGAUCGCGCuG-GCGcGCGCgAUCg -3'
miRNA:   3'- aguACUAGCGCGuCaCGUaCGCG-UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.