miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 3' -52.9 NC_005262.1 + 24726 0.68 0.698536
Target:  5'- --cUGAUCGCGCuG-GCGcGCGCgAUCg -3'
miRNA:   3'- aguACUAGCGCGuCaCGUaCGCG-UAG- -5'
23919 3' -52.9 NC_005262.1 + 52992 0.68 0.72049
Target:  5'- gUCGUGAUCGuCGCGGcaGCucGCGCAg- -3'
miRNA:   3'- -AGUACUAGC-GCGUCa-CGuaCGCGUag -5'
23919 3' -52.9 NC_005262.1 + 30870 0.68 0.752704
Target:  5'- aUCGUGAagGCGCuGgcgaGCGUcGCGCGUg -3'
miRNA:   3'- -AGUACUagCGCGuCa---CGUA-CGCGUAg -5'
23919 3' -52.9 NC_005262.1 + 39634 0.68 0.752704
Target:  5'- ---gGAaCGUGCAG-GCGUGCGCcUCc -3'
miRNA:   3'- aguaCUaGCGCGUCaCGUACGCGuAG- -5'
23919 3' -52.9 NC_005262.1 + 40865 0.67 0.763202
Target:  5'- -----cUCGCGCGGaGCAUG-GCGUCg -3'
miRNA:   3'- aguacuAGCGCGUCaCGUACgCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 20727 0.67 0.772531
Target:  5'- -gAUGAUgaagcugccgcggCGCGCGGUGCcgGcCGgGUCg -3'
miRNA:   3'- agUACUA-------------GCGCGUCACGuaC-GCgUAG- -5'
23919 3' -52.9 NC_005262.1 + 4904 0.67 0.77356
Target:  5'- --cUGAUCGCGCAGcGCG-GCaGCAg- -3'
miRNA:   3'- aguACUAGCGCGUCaCGUaCG-CGUag -5'
23919 3' -52.9 NC_005262.1 + 17241 0.67 0.77356
Target:  5'- gUCGUGggCGuCGCGGgagcggcgGCcgGCGCcgCg -3'
miRNA:   3'- -AGUACuaGC-GCGUCa-------CGuaCGCGuaG- -5'
23919 3' -52.9 NC_005262.1 + 2207 0.67 0.77356
Target:  5'- ---cGAUCGCGCGGcaCAU-CGCGUCg -3'
miRNA:   3'- aguaCUAGCGCGUCacGUAcGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 26880 0.67 0.77356
Target:  5'- gUCAcGAUCGaGUGG-GCcgGCGCGUCc -3'
miRNA:   3'- -AGUaCUAGCgCGUCaCGuaCGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 48965 0.67 0.77356
Target:  5'- gCAUGA-CGcCGCAGaUGCAggcgGCGC-UCa -3'
miRNA:   3'- aGUACUaGC-GCGUC-ACGUa---CGCGuAG- -5'
23919 3' -52.9 NC_005262.1 + 55124 0.67 0.77356
Target:  5'- aCAUGcUCGCGCAGUucGCAcGCGaauUCc -3'
miRNA:   3'- aGUACuAGCGCGUCA--CGUaCGCgu-AG- -5'
23919 3' -52.9 NC_005262.1 + 1073 0.67 0.782752
Target:  5'- cCAg---CGCGCcgaucagGGUGCGUGCGCGa- -3'
miRNA:   3'- aGUacuaGCGCG-------UCACGUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 28297 0.67 0.783765
Target:  5'- cUAUG--CGCGCaAGcGCGUGCGCAUg -3'
miRNA:   3'- aGUACuaGCGCG-UCaCGUACGCGUAg -5'
23919 3' -52.9 NC_005262.1 + 48777 0.67 0.80367
Target:  5'- aCAUGGcaGCGCAG-GaCGUGCGCGa- -3'
miRNA:   3'- aGUACUagCGCGUCaC-GUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 26284 0.67 0.80367
Target:  5'- cUCAgcuUCGCGaCGGUGCcguAUGCGC-UCu -3'
miRNA:   3'- -AGUacuAGCGC-GUCACG---UACGCGuAG- -5'
23919 3' -52.9 NC_005262.1 + 46523 0.67 0.80367
Target:  5'- uUCGUGucguagguGUCGCGCAGcucgaaCAgGCGCGUCu -3'
miRNA:   3'- -AGUAC--------UAGCGCGUCac----GUaCGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 63688 0.67 0.80367
Target:  5'- ---cGGUCGCcggcCGGUGaCAUGCGCAg- -3'
miRNA:   3'- aguaCUAGCGc---GUCAC-GUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 52064 0.66 0.813347
Target:  5'- ---aGAUCGCGaAGccgaGCAUGCGCAa- -3'
miRNA:   3'- aguaCUAGCGCgUCa---CGUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 5342 0.66 0.813347
Target:  5'- gUCGUGAcgcCGCGCAcgccUGCcgGgGCGUCc -3'
miRNA:   3'- -AGUACUa--GCGCGUc---ACGuaCgCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.