miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 3' -52.9 NC_005262.1 + 4904 0.67 0.77356
Target:  5'- --cUGAUCGCGCAGcGCG-GCaGCAg- -3'
miRNA:   3'- aguACUAGCGCGUCaCGUaCG-CGUag -5'
23919 3' -52.9 NC_005262.1 + 20727 0.67 0.772531
Target:  5'- -gAUGAUgaagcugccgcggCGCGCGGUGCcgGcCGgGUCg -3'
miRNA:   3'- agUACUA-------------GCGCGUCACGuaC-GCgUAG- -5'
23919 3' -52.9 NC_005262.1 + 40865 0.67 0.763202
Target:  5'- -----cUCGCGCGGaGCAUG-GCGUCg -3'
miRNA:   3'- aguacuAGCGCGUCaCGUACgCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 39634 0.68 0.752704
Target:  5'- ---gGAaCGUGCAG-GCGUGCGCcUCc -3'
miRNA:   3'- aguaCUaGCGCGUCaCGUACGCGuAG- -5'
23919 3' -52.9 NC_005262.1 + 30870 0.68 0.752704
Target:  5'- aUCGUGAagGCGCuGgcgaGCGUcGCGCGUg -3'
miRNA:   3'- -AGUACUagCGCGuCa---CGUA-CGCGUAg -5'
23919 3' -52.9 NC_005262.1 + 52992 0.68 0.72049
Target:  5'- gUCGUGAUCGuCGCGGcaGCucGCGCAg- -3'
miRNA:   3'- -AGUACUAGC-GCGUCa-CGuaCGCGUag -5'
23919 3' -52.9 NC_005262.1 + 22628 0.68 0.698536
Target:  5'- ---cGAUCGCgGCGGUGCccuccUGCGCGc- -3'
miRNA:   3'- aguaCUAGCG-CGUCACGu----ACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 22356 0.68 0.698536
Target:  5'- cUAUGAUcCGCGUGGUGCGgaggguguccgGCGCGgaUCg -3'
miRNA:   3'- aGUACUA-GCGCGUCACGUa----------CGCGU--AG- -5'
23919 3' -52.9 NC_005262.1 + 24726 0.68 0.698536
Target:  5'- --cUGAUCGCGCuG-GCGcGCGCgAUCg -3'
miRNA:   3'- aguACUAGCGCGuCaCGUaCGCG-UAG- -5'
23919 3' -52.9 NC_005262.1 + 45667 0.69 0.687451
Target:  5'- aCA-GAUCgaGCGCauGGUGCcgcacuucGUGCGCAUCg -3'
miRNA:   3'- aGUaCUAG--CGCG--UCACG--------UACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 50758 0.69 0.687451
Target:  5'- ---aGAUCGUGCAGacggGCAaggUGCGguUCg -3'
miRNA:   3'- aguaCUAGCGCGUCa---CGU---ACGCguAG- -5'
23919 3' -52.9 NC_005262.1 + 57998 0.69 0.676312
Target:  5'- cUCAUGAaCGCGU---GCAUGCGCGc- -3'
miRNA:   3'- -AGUACUaGCGCGucaCGUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 40463 0.69 0.665128
Target:  5'- cCGUGGUCGaGCGcGUGCucGUGCGCGg- -3'
miRNA:   3'- aGUACUAGCgCGU-CACG--UACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 25002 0.69 0.653913
Target:  5'- --uUGcUCGCGCcGUGCA-GCGCAUg -3'
miRNA:   3'- aguACuAGCGCGuCACGUaCGCGUAg -5'
23919 3' -52.9 NC_005262.1 + 43986 0.69 0.642676
Target:  5'- gCGUGAUCGCGCGG-GCGaugGuCGCuuaAUCg -3'
miRNA:   3'- aGUACUAGCGCGUCaCGUa--C-GCG---UAG- -5'
23919 3' -52.9 NC_005262.1 + 52635 0.69 0.642676
Target:  5'- cUCGUGG-CGCGCGaccGCAgagcagaacgUGCGCAUCg -3'
miRNA:   3'- -AGUACUaGCGCGUca-CGU----------ACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 13005 0.7 0.635929
Target:  5'- aCGUGGguguaCGCGCAGgagcGCGccaagggcuacgcggUGCGCGUCg -3'
miRNA:   3'- aGUACUa----GCGCGUCa---CGU---------------ACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 14533 0.7 0.63143
Target:  5'- gCAUGGcaGUGCcGUGCAUGCGCuggAUCg -3'
miRNA:   3'- aGUACUagCGCGuCACGUACGCG---UAG- -5'
23919 3' -52.9 NC_005262.1 + 4551 0.7 0.608949
Target:  5'- aUCGUGcgCGCGCGGcGCAUcucGCGCc-- -3'
miRNA:   3'- -AGUACuaGCGCGUCaCGUA---CGCGuag -5'
23919 3' -52.9 NC_005262.1 + 10734 0.7 0.597735
Target:  5'- uUCGcGAUCGCGcCGGU-CA-GCGCGUCg -3'
miRNA:   3'- -AGUaCUAGCGC-GUCAcGUaCGCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.