Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23919 | 3' | -52.9 | NC_005262.1 | + | 13672 | 0.71 | 0.542302 |
Target: 5'- aCAUGAcgaagaucacgCGCGCGGUGCugGCGCGUg -3' miRNA: 3'- aGUACUa----------GCGCGUCACGuaCGCGUAg -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 21753 | 0.72 | 0.488676 |
Target: 5'- ---aGAUCGCGCAGcgGCA--CGCGUCa -3' miRNA: 3'- aguaCUAGCGCGUCa-CGUacGCGUAG- -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 12856 | 0.73 | 0.457715 |
Target: 5'- gUCGUGccgagcuUCGCGCugccGUGCAcggugacgcucgUGCGCAUCa -3' miRNA: 3'- -AGUACu------AGCGCGu---CACGU------------ACGCGUAG- -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 2970 | 0.73 | 0.437668 |
Target: 5'- ---cGAUCGCGUAG-GCcgGCGCAa- -3' miRNA: 3'- aguaCUAGCGCGUCaCGuaCGCGUag -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 59044 | 0.74 | 0.408568 |
Target: 5'- aCAUGAacCGCGUgaagcaGGUGCAggaGCGCAUCa -3' miRNA: 3'- aGUACUa-GCGCG------UCACGUa--CGCGUAG- -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 39722 | 0.81 | 0.143235 |
Target: 5'- -uGUGAUCGCGCAGcagGCGcaGCGCAUCa -3' miRNA: 3'- agUACUAGCGCGUCa--CGUa-CGCGUAG- -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 35326 | 1.11 | 0.001196 |
Target: 5'- gUCAUGAUCGCGCAGUGCAUGCGCAUCa -3' miRNA: 3'- -AGUACUAGCGCGUCACGUACGCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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