miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 3' -52.9 NC_005262.1 + 1073 0.67 0.782752
Target:  5'- cCAg---CGCGCcgaucagGGUGCGUGCGCGa- -3'
miRNA:   3'- aGUacuaGCGCG-------UCACGUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 2207 0.67 0.77356
Target:  5'- ---cGAUCGCGCGGcaCAU-CGCGUCg -3'
miRNA:   3'- aguaCUAGCGCGUCacGUAcGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 2919 0.66 0.832093
Target:  5'- uUCAucUGGUCgGCGCAGUaGUGUGUG-AUCg -3'
miRNA:   3'- -AGU--ACUAG-CGCGUCA-CGUACGCgUAG- -5'
23919 3' -52.9 NC_005262.1 + 2970 0.73 0.437668
Target:  5'- ---cGAUCGCGUAG-GCcgGCGCAa- -3'
miRNA:   3'- aguaCUAGCGCGUCaCGuaCGCGUag -5'
23919 3' -52.9 NC_005262.1 + 3321 0.66 0.841142
Target:  5'- cUCGcccUGAUCGCGCAGcgucaUGUAgagcgacagGCGCAg- -3'
miRNA:   3'- -AGU---ACUAGCGCGUC-----ACGUa--------CGCGUag -5'
23919 3' -52.9 NC_005262.1 + 4551 0.7 0.608949
Target:  5'- aUCGUGcgCGCGCGGcGCAUcucGCGCc-- -3'
miRNA:   3'- -AGUACuaGCGCGUCaCGUA---CGCGuag -5'
23919 3' -52.9 NC_005262.1 + 4904 0.67 0.77356
Target:  5'- --cUGAUCGCGCAGcGCG-GCaGCAg- -3'
miRNA:   3'- aguACUAGCGCGUCaCGUaCG-CGUag -5'
23919 3' -52.9 NC_005262.1 + 5342 0.66 0.813347
Target:  5'- gUCGUGAcgcCGCGCAcgccUGCcgGgGCGUCc -3'
miRNA:   3'- -AGUACUa--GCGCGUc---ACGuaCgCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 10734 0.7 0.597735
Target:  5'- uUCGcGAUCGCGcCGGU-CA-GCGCGUCg -3'
miRNA:   3'- -AGUaCUAGCGC-GUCAcGUaCGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 12856 0.73 0.457715
Target:  5'- gUCGUGccgagcuUCGCGCugccGUGCAcggugacgcucgUGCGCAUCa -3'
miRNA:   3'- -AGUACu------AGCGCGu---CACGU------------ACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 13005 0.7 0.635929
Target:  5'- aCGUGGguguaCGCGCAGgagcGCGccaagggcuacgcggUGCGCGUCg -3'
miRNA:   3'- aGUACUa----GCGCGUCa---CGU---------------ACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 13672 0.71 0.542302
Target:  5'- aCAUGAcgaagaucacgCGCGCGGUGCugGCGCGUg -3'
miRNA:   3'- aGUACUa----------GCGCGUCACGuaCGCGUAg -5'
23919 3' -52.9 NC_005262.1 + 14533 0.7 0.63143
Target:  5'- gCAUGGcaGUGCcGUGCAUGCGCuggAUCg -3'
miRNA:   3'- aGUACUagCGCGuCACGUACGCG---UAG- -5'
23919 3' -52.9 NC_005262.1 + 17241 0.67 0.77356
Target:  5'- gUCGUGggCGuCGCGGgagcggcgGCcgGCGCcgCg -3'
miRNA:   3'- -AGUACuaGC-GCGUCa-------CGuaCGCGuaG- -5'
23919 3' -52.9 NC_005262.1 + 20727 0.67 0.772531
Target:  5'- -gAUGAUgaagcugccgcggCGCGCGGUGCcgGcCGgGUCg -3'
miRNA:   3'- agUACUA-------------GCGCGUCACGuaC-GCgUAG- -5'
23919 3' -52.9 NC_005262.1 + 20780 0.66 0.841142
Target:  5'- ---aGAUCGCGCAc-GC--GCGCAUCu -3'
miRNA:   3'- aguaCUAGCGCGUcaCGuaCGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 21753 0.72 0.488676
Target:  5'- ---aGAUCGCGCAGcgGCA--CGCGUCa -3'
miRNA:   3'- aguaCUAGCGCGUCa-CGUacGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 22356 0.68 0.698536
Target:  5'- cUAUGAUcCGCGUGGUGCGgaggguguccgGCGCGgaUCg -3'
miRNA:   3'- aGUACUA-GCGCGUCACGUa----------CGCGU--AG- -5'
23919 3' -52.9 NC_005262.1 + 22628 0.68 0.698536
Target:  5'- ---cGAUCGCgGCGGUGCccuccUGCGCGc- -3'
miRNA:   3'- aguaCUAGCG-CGUCACGu----ACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 24726 0.68 0.698536
Target:  5'- --cUGAUCGCGCuG-GCGcGCGCgAUCg -3'
miRNA:   3'- aguACUAGCGCGuCaCGUaCGCG-UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.