Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23919 | 3' | -52.9 | NC_005262.1 | + | 52064 | 0.66 | 0.813347 |
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Target: 5'- ---aGAUCGCGaAGccgaGCAUGCGCAa- -3' miRNA: 3'- aguaCUAGCGCgUCa---CGUACGCGUag -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 52635 | 0.69 | 0.642676 |
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Target: 5'- cUCGUGG-CGCGCGaccGCAgagcagaacgUGCGCAUCg -3' miRNA: 3'- -AGUACUaGCGCGUca-CGU----------ACGCGUAG- -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 52992 | 0.68 | 0.72049 |
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Target: 5'- gUCGUGAUCGuCGCGGcaGCucGCGCAg- -3' miRNA: 3'- -AGUACUAGC-GCGUCa-CGuaCGCGUag -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 55124 | 0.67 | 0.77356 |
|
Target: 5'- aCAUGcUCGCGCAGUucGCAcGCGaauUCc -3' miRNA: 3'- aGUACuAGCGCGUCA--CGUaCGCgu-AG- -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 57998 | 0.69 | 0.676312 |
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Target: 5'- cUCAUGAaCGCGU---GCAUGCGCGc- -3' miRNA: 3'- -AGUACUaGCGCGucaCGUACGCGUag -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 59044 | 0.74 | 0.408568 |
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Target: 5'- aCAUGAacCGCGUgaagcaGGUGCAggaGCGCAUCa -3' miRNA: 3'- aGUACUa-GCGCG------UCACGUa--CGCGUAG- -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 63688 | 0.67 | 0.80367 |
|
Target: 5'- ---cGGUCGCcggcCGGUGaCAUGCGCAg- -3' miRNA: 3'- aguaCUAGCGc---GUCAC-GUACGCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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