miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 3' -52.9 NC_005262.1 + 63688 0.67 0.80367
Target:  5'- ---cGGUCGCcggcCGGUGaCAUGCGCAg- -3'
miRNA:   3'- aguaCUAGCGc---GUCAC-GUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 59044 0.74 0.408568
Target:  5'- aCAUGAacCGCGUgaagcaGGUGCAggaGCGCAUCa -3'
miRNA:   3'- aGUACUa-GCGCG------UCACGUa--CGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 57998 0.69 0.676312
Target:  5'- cUCAUGAaCGCGU---GCAUGCGCGc- -3'
miRNA:   3'- -AGUACUaGCGCGucaCGUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 55124 0.67 0.77356
Target:  5'- aCAUGcUCGCGCAGUucGCAcGCGaauUCc -3'
miRNA:   3'- aGUACuAGCGCGUCA--CGUaCGCgu-AG- -5'
23919 3' -52.9 NC_005262.1 + 52992 0.68 0.72049
Target:  5'- gUCGUGAUCGuCGCGGcaGCucGCGCAg- -3'
miRNA:   3'- -AGUACUAGC-GCGUCa-CGuaCGCGUag -5'
23919 3' -52.9 NC_005262.1 + 52635 0.69 0.642676
Target:  5'- cUCGUGG-CGCGCGaccGCAgagcagaacgUGCGCAUCg -3'
miRNA:   3'- -AGUACUaGCGCGUca-CGU----------ACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 52064 0.66 0.813347
Target:  5'- ---aGAUCGCGaAGccgaGCAUGCGCAa- -3'
miRNA:   3'- aguaCUAGCGCgUCa---CGUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 50758 0.69 0.687451
Target:  5'- ---aGAUCGUGCAGacggGCAaggUGCGguUCg -3'
miRNA:   3'- aguaCUAGCGCGUCa---CGU---ACGCguAG- -5'
23919 3' -52.9 NC_005262.1 + 48965 0.67 0.77356
Target:  5'- gCAUGA-CGcCGCAGaUGCAggcgGCGC-UCa -3'
miRNA:   3'- aGUACUaGC-GCGUC-ACGUa---CGCGuAG- -5'
23919 3' -52.9 NC_005262.1 + 48777 0.67 0.80367
Target:  5'- aCAUGGcaGCGCAG-GaCGUGCGCGa- -3'
miRNA:   3'- aGUACUagCGCGUCaC-GUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 46883 0.66 0.822825
Target:  5'- uUCAUG-UgGUGCGGUGCG-GUGCGg- -3'
miRNA:   3'- -AGUACuAgCGCGUCACGUaCGCGUag -5'
23919 3' -52.9 NC_005262.1 + 46523 0.67 0.80367
Target:  5'- uUCGUGucguagguGUCGCGCAGcucgaaCAgGCGCGUCu -3'
miRNA:   3'- -AGUAC--------UAGCGCGUCac----GUaCGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 45667 0.69 0.687451
Target:  5'- aCA-GAUCgaGCGCauGGUGCcgcacuucGUGCGCAUCg -3'
miRNA:   3'- aGUaCUAG--CGCG--UCACG--------UACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 43986 0.69 0.642676
Target:  5'- gCGUGAUCGCGCGG-GCGaugGuCGCuuaAUCg -3'
miRNA:   3'- aGUACUAGCGCGUCaCGUa--C-GCG---UAG- -5'
23919 3' -52.9 NC_005262.1 + 41549 0.66 0.813347
Target:  5'- gCGUGAU-GCGCAGgccgGCcgGCGUg-- -3'
miRNA:   3'- aGUACUAgCGCGUCa---CGuaCGCGuag -5'
23919 3' -52.9 NC_005262.1 + 40865 0.67 0.763202
Target:  5'- -----cUCGCGCGGaGCAUG-GCGUCg -3'
miRNA:   3'- aguacuAGCGCGUCaCGUACgCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 40463 0.69 0.665128
Target:  5'- cCGUGGUCGaGCGcGUGCucGUGCGCGg- -3'
miRNA:   3'- aGUACUAGCgCGU-CACG--UACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 39722 0.81 0.143235
Target:  5'- -uGUGAUCGCGCAGcagGCGcaGCGCAUCa -3'
miRNA:   3'- agUACUAGCGCGUCa--CGUa-CGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 39634 0.68 0.752704
Target:  5'- ---gGAaCGUGCAG-GCGUGCGCcUCc -3'
miRNA:   3'- aguaCUaGCGCGUCaCGUACGCGuAG- -5'
23919 3' -52.9 NC_005262.1 + 35326 1.11 0.001196
Target:  5'- gUCAUGAUCGCGCAGUGCAUGCGCAUCa -3'
miRNA:   3'- -AGUACUAGCGCGUCACGUACGCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.