Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23919 | 3' | -52.9 | NC_005262.1 | + | 4904 | 0.67 | 0.77356 |
|
Target: 5'- --cUGAUCGCGCAGcGCG-GCaGCAg- -3' miRNA: 3'- aguACUAGCGCGUCaCGUaCG-CGUag -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 4551 | 0.7 | 0.608949 |
|
Target: 5'- aUCGUGcgCGCGCGGcGCAUcucGCGCc-- -3' miRNA: 3'- -AGUACuaGCGCGUCaCGUA---CGCGuag -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 3321 | 0.66 | 0.841142 |
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Target: 5'- cUCGcccUGAUCGCGCAGcgucaUGUAgagcgacagGCGCAg- -3' miRNA: 3'- -AGU---ACUAGCGCGUC-----ACGUa--------CGCGUag -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 2970 | 0.73 | 0.437668 |
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Target: 5'- ---cGAUCGCGUAG-GCcgGCGCAa- -3' miRNA: 3'- aguaCUAGCGCGUCaCGuaCGCGUag -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 2919 | 0.66 | 0.832093 |
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Target: 5'- uUCAucUGGUCgGCGCAGUaGUGUGUG-AUCg -3' miRNA: 3'- -AGU--ACUAG-CGCGUCA-CGUACGCgUAG- -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 2207 | 0.67 | 0.77356 |
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Target: 5'- ---cGAUCGCGCGGcaCAU-CGCGUCg -3' miRNA: 3'- aguaCUAGCGCGUCacGUAcGCGUAG- -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 1073 | 0.67 | 0.782752 |
|
Target: 5'- cCAg---CGCGCcgaucagGGUGCGUGCGCGa- -3' miRNA: 3'- aGUacuaGCGCG-------UCACGUACGCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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