miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 3' -52.9 NC_005262.1 + 13005 0.7 0.635929
Target:  5'- aCGUGGguguaCGCGCAGgagcGCGccaagggcuacgcggUGCGCGUCg -3'
miRNA:   3'- aGUACUa----GCGCGUCa---CGU---------------ACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 43986 0.69 0.642676
Target:  5'- gCGUGAUCGCGCGG-GCGaugGuCGCuuaAUCg -3'
miRNA:   3'- aGUACUAGCGCGUCaCGUa--C-GCG---UAG- -5'
23919 3' -52.9 NC_005262.1 + 52635 0.69 0.642676
Target:  5'- cUCGUGG-CGCGCGaccGCAgagcagaacgUGCGCAUCg -3'
miRNA:   3'- -AGUACUaGCGCGUca-CGU----------ACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 45667 0.69 0.687451
Target:  5'- aCA-GAUCgaGCGCauGGUGCcgcacuucGUGCGCAUCg -3'
miRNA:   3'- aGUaCUAG--CGCG--UCACG--------UACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 17241 0.67 0.77356
Target:  5'- gUCGUGggCGuCGCGGgagcggcgGCcgGCGCcgCg -3'
miRNA:   3'- -AGUACuaGC-GCGUCa-------CGuaCGCGuaG- -5'
23919 3' -52.9 NC_005262.1 + 4904 0.67 0.77356
Target:  5'- --cUGAUCGCGCAGcGCG-GCaGCAg- -3'
miRNA:   3'- aguACUAGCGCGUCaCGUaCG-CGUag -5'
23919 3' -52.9 NC_005262.1 + 20727 0.67 0.772531
Target:  5'- -gAUGAUgaagcugccgcggCGCGCGGUGCcgGcCGgGUCg -3'
miRNA:   3'- agUACUA-------------GCGCGUCACGuaC-GCgUAG- -5'
23919 3' -52.9 NC_005262.1 + 40865 0.67 0.763202
Target:  5'- -----cUCGCGCGGaGCAUG-GCGUCg -3'
miRNA:   3'- aguacuAGCGCGUCaCGUACgCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 30870 0.68 0.752704
Target:  5'- aUCGUGAagGCGCuGgcgaGCGUcGCGCGUg -3'
miRNA:   3'- -AGUACUagCGCGuCa---CGUA-CGCGUAg -5'
23919 3' -52.9 NC_005262.1 + 39634 0.68 0.752704
Target:  5'- ---gGAaCGUGCAG-GCGUGCGCcUCc -3'
miRNA:   3'- aguaCUaGCGCGUCaCGUACGCGuAG- -5'
23919 3' -52.9 NC_005262.1 + 52992 0.68 0.72049
Target:  5'- gUCGUGAUCGuCGCGGcaGCucGCGCAg- -3'
miRNA:   3'- -AGUACUAGC-GCGUCa-CGuaCGCGUag -5'
23919 3' -52.9 NC_005262.1 + 1073 0.67 0.782752
Target:  5'- cCAg---CGCGCcgaucagGGUGCGUGCGCGa- -3'
miRNA:   3'- aGUacuaGCGCG-------UCACGUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 46523 0.67 0.80367
Target:  5'- uUCGUGucguagguGUCGCGCAGcucgaaCAgGCGCGUCu -3'
miRNA:   3'- -AGUAC--------UAGCGCGUCac----GUaCGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 26284 0.67 0.80367
Target:  5'- cUCAgcuUCGCGaCGGUGCcguAUGCGC-UCu -3'
miRNA:   3'- -AGUacuAGCGC-GUCACG---UACGCGuAG- -5'
23919 3' -52.9 NC_005262.1 + 63688 0.67 0.80367
Target:  5'- ---cGGUCGCcggcCGGUGaCAUGCGCAg- -3'
miRNA:   3'- aguaCUAGCGc---GUCAC-GUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 41549 0.66 0.813347
Target:  5'- gCGUGAU-GCGCAGgccgGCcgGCGUg-- -3'
miRNA:   3'- aGUACUAgCGCGUCa---CGuaCGCGuag -5'
23919 3' -52.9 NC_005262.1 + 5342 0.66 0.813347
Target:  5'- gUCGUGAcgcCGCGCAcgccUGCcgGgGCGUCc -3'
miRNA:   3'- -AGUACUa--GCGCGUc---ACGuaCgCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 52064 0.66 0.813347
Target:  5'- ---aGAUCGCGaAGccgaGCAUGCGCAa- -3'
miRNA:   3'- aguaCUAGCGCgUCa---CGUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 46883 0.66 0.822825
Target:  5'- uUCAUG-UgGUGCGGUGCG-GUGCGg- -3'
miRNA:   3'- -AGUACuAgCGCGUCACGUaCGCGUag -5'
23919 3' -52.9 NC_005262.1 + 35326 1.11 0.001196
Target:  5'- gUCAUGAUCGCGCAGUGCAUGCGCAUCa -3'
miRNA:   3'- -AGUACUAGCGCGUCACGUACGCGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.