Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23919 | 3' | -52.9 | NC_005262.1 | + | 41549 | 0.66 | 0.813347 |
Target: 5'- gCGUGAU-GCGCAGgccgGCcgGCGUg-- -3' miRNA: 3'- aGUACUAgCGCGUCa---CGuaCGCGuag -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 63688 | 0.67 | 0.80367 |
Target: 5'- ---cGGUCGCcggcCGGUGaCAUGCGCAg- -3' miRNA: 3'- aguaCUAGCGc---GUCAC-GUACGCGUag -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 26284 | 0.67 | 0.80367 |
Target: 5'- cUCAgcuUCGCGaCGGUGCcguAUGCGC-UCu -3' miRNA: 3'- -AGUacuAGCGC-GUCACG---UACGCGuAG- -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 46523 | 0.67 | 0.80367 |
Target: 5'- uUCGUGucguagguGUCGCGCAGcucgaaCAgGCGCGUCu -3' miRNA: 3'- -AGUAC--------UAGCGCGUCac----GUaCGCGUAG- -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 1073 | 0.67 | 0.782752 |
Target: 5'- cCAg---CGCGCcgaucagGGUGCGUGCGCGa- -3' miRNA: 3'- aGUacuaGCGCG-------UCACGUACGCGUag -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 17241 | 0.67 | 0.77356 |
Target: 5'- gUCGUGggCGuCGCGGgagcggcgGCcgGCGCcgCg -3' miRNA: 3'- -AGUACuaGC-GCGUCa-------CGuaCGCGuaG- -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 35326 | 1.11 | 0.001196 |
Target: 5'- gUCAUGAUCGCGCAGUGCAUGCGCAUCa -3' miRNA: 3'- -AGUACUAGCGCGUCACGUACGCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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