miRNA display CGI


Results 41 - 47 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 3' -52.9 NC_005262.1 + 41549 0.66 0.813347
Target:  5'- gCGUGAU-GCGCAGgccgGCcgGCGUg-- -3'
miRNA:   3'- aGUACUAgCGCGUCa---CGuaCGCGuag -5'
23919 3' -52.9 NC_005262.1 + 63688 0.67 0.80367
Target:  5'- ---cGGUCGCcggcCGGUGaCAUGCGCAg- -3'
miRNA:   3'- aguaCUAGCGc---GUCAC-GUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 26284 0.67 0.80367
Target:  5'- cUCAgcuUCGCGaCGGUGCcguAUGCGC-UCu -3'
miRNA:   3'- -AGUacuAGCGC-GUCACG---UACGCGuAG- -5'
23919 3' -52.9 NC_005262.1 + 46523 0.67 0.80367
Target:  5'- uUCGUGucguagguGUCGCGCAGcucgaaCAgGCGCGUCu -3'
miRNA:   3'- -AGUAC--------UAGCGCGUCac----GUaCGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 1073 0.67 0.782752
Target:  5'- cCAg---CGCGCcgaucagGGUGCGUGCGCGa- -3'
miRNA:   3'- aGUacuaGCGCG-------UCACGUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 17241 0.67 0.77356
Target:  5'- gUCGUGggCGuCGCGGgagcggcgGCcgGCGCcgCg -3'
miRNA:   3'- -AGUACuaGC-GCGUCa-------CGuaCGCGuaG- -5'
23919 3' -52.9 NC_005262.1 + 35326 1.11 0.001196
Target:  5'- gUCAUGAUCGCGCAGUGCAUGCGCAUCa -3'
miRNA:   3'- -AGUACUAGCGCGUCACGUACGCGUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.