Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23919 | 3' | -52.9 | NC_005262.1 | + | 3321 | 0.66 | 0.841142 |
Target: 5'- cUCGcccUGAUCGCGCAGcgucaUGUAgagcgacagGCGCAg- -3' miRNA: 3'- -AGU---ACUAGCGCGUC-----ACGUa--------CGCGUag -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 57998 | 0.69 | 0.676312 |
Target: 5'- cUCAUGAaCGCGU---GCAUGCGCGc- -3' miRNA: 3'- -AGUACUaGCGCGucaCGUACGCGUag -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 25002 | 0.69 | 0.653913 |
Target: 5'- --uUGcUCGCGCcGUGCA-GCGCAUg -3' miRNA: 3'- aguACuAGCGCGuCACGUaCGCGUAg -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 35326 | 1.11 | 0.001196 |
Target: 5'- gUCAUGAUCGCGCAGUGCAUGCGCAUCa -3' miRNA: 3'- -AGUACUAGCGCGUCACGUACGCGUAG- -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 41549 | 0.66 | 0.813347 |
Target: 5'- gCGUGAU-GCGCAGgccgGCcgGCGUg-- -3' miRNA: 3'- aGUACUAgCGCGUCa---CGuaCGCGuag -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 63688 | 0.67 | 0.80367 |
Target: 5'- ---cGGUCGCcggcCGGUGaCAUGCGCAg- -3' miRNA: 3'- aguaCUAGCGc---GUCAC-GUACGCGUag -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 46523 | 0.67 | 0.80367 |
Target: 5'- uUCGUGucguagguGUCGCGCAGcucgaaCAgGCGCGUCu -3' miRNA: 3'- -AGUAC--------UAGCGCGUCac----GUaCGCGUAG- -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 1073 | 0.67 | 0.782752 |
Target: 5'- cCAg---CGCGCcgaucagGGUGCGUGCGCGa- -3' miRNA: 3'- aGUacuaGCGCG-------UCACGUACGCGUag -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 20727 | 0.67 | 0.772531 |
Target: 5'- -gAUGAUgaagcugccgcggCGCGCGGUGCcgGcCGgGUCg -3' miRNA: 3'- agUACUA-------------GCGCGUCACGuaC-GCgUAG- -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 22628 | 0.68 | 0.698536 |
Target: 5'- ---cGAUCGCgGCGGUGCccuccUGCGCGc- -3' miRNA: 3'- aguaCUAGCG-CGUCACGu----ACGCGUag -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 30870 | 0.68 | 0.752704 |
Target: 5'- aUCGUGAagGCGCuGgcgaGCGUcGCGCGUg -3' miRNA: 3'- -AGUACUagCGCGuCa---CGUA-CGCGUAg -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 4904 | 0.67 | 0.77356 |
Target: 5'- --cUGAUCGCGCAGcGCG-GCaGCAg- -3' miRNA: 3'- aguACUAGCGCGUCaCGUaCG-CGUag -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 46883 | 0.66 | 0.822825 |
Target: 5'- uUCAUG-UgGUGCGGUGCG-GUGCGg- -3' miRNA: 3'- -AGUACuAgCGCGUCACGUaCGCGUag -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 39634 | 0.68 | 0.752704 |
Target: 5'- ---gGAaCGUGCAG-GCGUGCGCcUCc -3' miRNA: 3'- aguaCUaGCGCGUCaCGUACGCGuAG- -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 52064 | 0.66 | 0.813347 |
Target: 5'- ---aGAUCGCGaAGccgaGCAUGCGCAa- -3' miRNA: 3'- aguaCUAGCGCgUCa---CGUACGCGUag -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 17241 | 0.67 | 0.77356 |
Target: 5'- gUCGUGggCGuCGCGGgagcggcgGCcgGCGCcgCg -3' miRNA: 3'- -AGUACuaGC-GCGUCa-------CGuaCGCGuaG- -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 52992 | 0.68 | 0.72049 |
Target: 5'- gUCGUGAUCGuCGCGGcaGCucGCGCAg- -3' miRNA: 3'- -AGUACUAGC-GCGUCa-CGuaCGCGUag -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 40463 | 0.69 | 0.665128 |
Target: 5'- cCGUGGUCGaGCGcGUGCucGUGCGCGg- -3' miRNA: 3'- aGUACUAGCgCGU-CACG--UACGCGUag -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 5342 | 0.66 | 0.813347 |
Target: 5'- gUCGUGAcgcCGCGCAcgccUGCcgGgGCGUCc -3' miRNA: 3'- -AGUACUa--GCGCGUc---ACGuaCgCGUAG- -5' |
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23919 | 3' | -52.9 | NC_005262.1 | + | 26284 | 0.67 | 0.80367 |
Target: 5'- cUCAgcuUCGCGaCGGUGCcguAUGCGC-UCu -3' miRNA: 3'- -AGUacuAGCGC-GUCACG---UACGCGuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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