miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23919 3' -52.9 NC_005262.1 + 25002 0.69 0.653913
Target:  5'- --uUGcUCGCGCcGUGCA-GCGCAUg -3'
miRNA:   3'- aguACuAGCGCGuCACGUaCGCGUAg -5'
23919 3' -52.9 NC_005262.1 + 10734 0.7 0.597735
Target:  5'- uUCGcGAUCGCGcCGGU-CA-GCGCGUCg -3'
miRNA:   3'- -AGUaCUAGCGC-GUCAcGUaCGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 20727 0.67 0.772531
Target:  5'- -gAUGAUgaagcugccgcggCGCGCGGUGCcgGcCGgGUCg -3'
miRNA:   3'- agUACUA-------------GCGCGUCACGuaC-GCgUAG- -5'
23919 3' -52.9 NC_005262.1 + 43986 0.69 0.642676
Target:  5'- gCGUGAUCGCGCGG-GCGaugGuCGCuuaAUCg -3'
miRNA:   3'- aGUACUAGCGCGUCaCGUa--C-GCG---UAG- -5'
23919 3' -52.9 NC_005262.1 + 14533 0.7 0.63143
Target:  5'- gCAUGGcaGUGCcGUGCAUGCGCuggAUCg -3'
miRNA:   3'- aGUACUagCGCGuCACGUACGCG---UAG- -5'
23919 3' -52.9 NC_005262.1 + 4551 0.7 0.608949
Target:  5'- aUCGUGcgCGCGCGGcGCAUcucGCGCc-- -3'
miRNA:   3'- -AGUACuaGCGCGUCaCGUA---CGCGuag -5'
23919 3' -52.9 NC_005262.1 + 13672 0.71 0.542302
Target:  5'- aCAUGAcgaagaucacgCGCGCGGUGCugGCGCGUg -3'
miRNA:   3'- aGUACUa----------GCGCGUCACGuaCGCGUAg -5'
23919 3' -52.9 NC_005262.1 + 12856 0.73 0.457715
Target:  5'- gUCGUGccgagcuUCGCGCugccGUGCAcggugacgcucgUGCGCAUCa -3'
miRNA:   3'- -AGUACu------AGCGCGu---CACGU------------ACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 52635 0.69 0.642676
Target:  5'- cUCGUGG-CGCGCGaccGCAgagcagaacgUGCGCAUCg -3'
miRNA:   3'- -AGUACUaGCGCGUca-CGU----------ACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 45667 0.69 0.687451
Target:  5'- aCA-GAUCgaGCGCauGGUGCcgcacuucGUGCGCAUCg -3'
miRNA:   3'- aGUaCUAG--CGCG--UCACG--------UACGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 50758 0.69 0.687451
Target:  5'- ---aGAUCGUGCAGacggGCAaggUGCGguUCg -3'
miRNA:   3'- aguaCUAGCGCGUCa---CGU---ACGCguAG- -5'
23919 3' -52.9 NC_005262.1 + 28297 0.67 0.783765
Target:  5'- cUAUG--CGCGCaAGcGCGUGCGCAUg -3'
miRNA:   3'- aGUACuaGCGCG-UCaCGUACGCGUAg -5'
23919 3' -52.9 NC_005262.1 + 48777 0.67 0.80367
Target:  5'- aCAUGGcaGCGCAG-GaCGUGCGCGa- -3'
miRNA:   3'- aGUACUagCGCGUCaC-GUACGCGUag -5'
23919 3' -52.9 NC_005262.1 + 34749 0.66 0.832093
Target:  5'- aCAcGGUgCGCGUcGUGCcgGCGCcgCu -3'
miRNA:   3'- aGUaCUA-GCGCGuCACGuaCGCGuaG- -5'
23919 3' -52.9 NC_005262.1 + 2919 0.66 0.832093
Target:  5'- uUCAucUGGUCgGCGCAGUaGUGUGUG-AUCg -3'
miRNA:   3'- -AGU--ACUAG-CGCGUCA-CGUACGCgUAG- -5'
23919 3' -52.9 NC_005262.1 + 20780 0.66 0.841142
Target:  5'- ---aGAUCGCGCAc-GC--GCGCAUCu -3'
miRNA:   3'- aguaCUAGCGCGUcaCGuaCGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 26880 0.67 0.77356
Target:  5'- gUCAcGAUCGaGUGG-GCcgGCGCGUCc -3'
miRNA:   3'- -AGUaCUAGCgCGUCaCGuaCGCGUAG- -5'
23919 3' -52.9 NC_005262.1 + 25740 0.66 0.813347
Target:  5'- ---cGAUCGCGCAGgccgGCAaGcCGC-UCa -3'
miRNA:   3'- aguaCUAGCGCGUCa---CGUaC-GCGuAG- -5'
23919 3' -52.9 NC_005262.1 + 22356 0.68 0.698536
Target:  5'- cUAUGAUcCGCGUGGUGCGgaggguguccgGCGCGgaUCg -3'
miRNA:   3'- aGUACUA-GCGCGUCACGUa----------CGCGU--AG- -5'
23919 3' -52.9 NC_005262.1 + 24726 0.68 0.698536
Target:  5'- --cUGAUCGCGCuG-GCGcGCGCgAUCg -3'
miRNA:   3'- aguACUAGCGCGuCaCGUaCGCG-UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.