Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23919 | 3' | -52.9 | NC_005262.1 | + | 48777 | 0.67 | 0.80367 |
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Target: 5'- aCAUGGcaGCGCAG-GaCGUGCGCGa- -3' miRNA: 3'- aGUACUagCGCGUCaC-GUACGCGUag -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 55124 | 0.67 | 0.77356 |
|
Target: 5'- aCAUGcUCGCGCAGUucGCAcGCGaauUCc -3' miRNA: 3'- aGUACuAGCGCGUCA--CGUaCGCgu-AG- -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 48965 | 0.67 | 0.77356 |
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Target: 5'- gCAUGA-CGcCGCAGaUGCAggcgGCGC-UCa -3' miRNA: 3'- aGUACUaGC-GCGUC-ACGUa---CGCGuAG- -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 2207 | 0.67 | 0.77356 |
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Target: 5'- ---cGAUCGCGCGGcaCAU-CGCGUCg -3' miRNA: 3'- aguaCUAGCGCGUCacGUAcGCGUAG- -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 26880 | 0.67 | 0.77356 |
|
Target: 5'- gUCAcGAUCGaGUGG-GCcgGCGCGUCc -3' miRNA: 3'- -AGUaCUAGCgCGUCaCGuaCGCGUAG- -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 22356 | 0.68 | 0.698536 |
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Target: 5'- cUAUGAUcCGCGUGGUGCGgaggguguccgGCGCGgaUCg -3' miRNA: 3'- aGUACUA-GCGCGUCACGUa----------CGCGU--AG- -5' |
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| 23919 | 3' | -52.9 | NC_005262.1 | + | 39722 | 0.81 | 0.143235 |
|
Target: 5'- -uGUGAUCGCGCAGcagGCGcaGCGCAUCa -3' miRNA: 3'- agUACUAGCGCGUCa--CGUa-CGCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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