Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23919 | 5' | -62 | NC_005262.1 | + | 15125 | 0.66 | 0.393123 |
Target: 5'- -aGGCGuggaauGCACGcauCGCGGCCgGcgUCg -3' miRNA: 3'- ugCCGCu-----CGUGCc--GCGCCGGgCuaAG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 22226 | 0.66 | 0.428494 |
Target: 5'- ---uCGAGUACguguugugGGCGUGGCCCGGaUCg -3' miRNA: 3'- ugccGCUCGUG--------CCGCGCCGGGCUaAG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 6119 | 0.66 | 0.384581 |
Target: 5'- aACGGCG-GCACagucgccucgauGuGCGCGGCCgGGa-- -3' miRNA: 3'- -UGCCGCuCGUG------------C-CGCGCCGGgCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 58859 | 0.66 | 0.384581 |
Target: 5'- uCGGCGAcgucacGC-CGGCGCaGCCCGcg-Cg -3' miRNA: 3'- uGCCGCU------CGuGCCGCGcCGGGCuaaG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 59517 | 0.66 | 0.387984 |
Target: 5'- gACGGCGAGUAUGGCccgaaggucaagcgcGCaaugGGCCaCGAg-- -3' miRNA: 3'- -UGCCGCUCGUGCCG---------------CG----CCGG-GCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 19435 | 0.66 | 0.410572 |
Target: 5'- cGCGGCaucuGAagcGCugGGCGuUGGCCuCGAUgcUCa -3' miRNA: 3'- -UGCCG----CU---CGugCCGC-GCCGG-GCUA--AG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 61536 | 0.66 | 0.428494 |
Target: 5'- uUGcGCGGGCcgucauCGaCGCGGCCCGAg-- -3' miRNA: 3'- uGC-CGCUCGu-----GCcGCGCCGGGCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 23957 | 0.66 | 0.393123 |
Target: 5'- uCGGCGAGUGUGGCGCGcaGUUCG-UUCg -3' miRNA: 3'- uGCCGCUCGUGCCGCGC--CGGGCuAAG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 57135 | 0.66 | 0.393123 |
Target: 5'- cCGGCGAGUACauCGCGGCCgUGucggUCg -3' miRNA: 3'- uGCCGCUCGUGccGCGCCGG-GCua--AG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 59653 | 0.66 | 0.419475 |
Target: 5'- cACGGCGccaCGCGGCGCcguuuuuuuauGCCCGGcuUUCg -3' miRNA: 3'- -UGCCGCuc-GUGCCGCGc----------CGGGCU--AAG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 10584 | 0.66 | 0.410572 |
Target: 5'- cGCGGagcAGCGCGGCGCGaGCggcuUCGAUg- -3' miRNA: 3'- -UGCCgc-UCGUGCCGCGC-CG----GGCUAag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 49711 | 0.66 | 0.401788 |
Target: 5'- gACGGCGuGCcggGCGGCGaacCGGCggCCGAa-- -3' miRNA: 3'- -UGCCGCuCG---UGCCGC---GCCG--GGCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 40643 | 0.66 | 0.401788 |
Target: 5'- cCGGCcacGGGCACGGCgucaGCGaCCCGAc-- -3' miRNA: 3'- uGCCG---CUCGUGCCG----CGCcGGGCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 61164 | 0.66 | 0.428494 |
Target: 5'- gGCGGCGGGCgagcugACGggcGCGCGGCgcuaCGAg-- -3' miRNA: 3'- -UGCCGCUCG------UGC---CGCGCCGg---GCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 2091 | 0.66 | 0.410572 |
Target: 5'- cGCGcCGAGCGaaccCGGCGCGcCCUGAUcgUCa -3' miRNA: 3'- -UGCcGCUCGU----GCCGCGCcGGGCUA--AG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 29044 | 0.66 | 0.410572 |
Target: 5'- aGCGGCGccGGCACGacGCGCaccguguucGGCUCGAc-- -3' miRNA: 3'- -UGCCGC--UCGUGC--CGCG---------CCGGGCUaag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 32843 | 0.66 | 0.425776 |
Target: 5'- uCGGCGAcaagguuucggcccGCAC-GUGCGGCgCCGAgcugUUCg -3' miRNA: 3'- uGCCGCU--------------CGUGcCGCGCCG-GGCU----AAG- -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 34138 | 0.66 | 0.427587 |
Target: 5'- cUGcGCGGGCGCGG-GCGGCaugccgcucgcugCCGAUg- -3' miRNA: 3'- uGC-CGCUCGUGCCgCGCCG-------------GGCUAag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 7764 | 0.66 | 0.428494 |
Target: 5'- uGCGGCGGGCccuuGCGGuUGCGGaUCgCGGUg- -3' miRNA: 3'- -UGCCGCUCG----UGCC-GCGCC-GG-GCUAag -5' |
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23919 | 5' | -62 | NC_005262.1 | + | 12658 | 0.66 | 0.401788 |
Target: 5'- cGCGcGCGGcGCGCGGCGaacccuGcGCCCG-UUCu -3' miRNA: 3'- -UGC-CGCU-CGUGCCGCg-----C-CGGGCuAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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